2A6S | Genus

Total Genus 32

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	32
sequence length	83
structure length	83
Chain Sequence	MKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAACRYH

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Conformational Change in the Catalytic Site of the Ribonuclease YoeB Toxin by YefM Antitoxin pubmed doi rcsb
molecule keywords	Toxin yoeB
molecule tags	Toxin
source organism	Escherichia coli
total genus	32
structure length	83
sequence length	83
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2005-07-04

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF06769	YoeB_toxin	YoeB-like toxin of bacterial type II toxin-antitoxin system

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.2310.20	Alpha Beta	2-Layer Sandwich	YaeB-like fold	RelE-like	2a6sA00

4YY3Y 3G5OB 4ML0B 4MMJA 4MCTB 2A6RA 5CW7B 2KHEA 4FXHA 5CZFC 5IWHA 4FXED 4MMGA 4MCXB 4ML2A 2A6SA 4LTTA 3OEIC 3BPQB 2A6QE 2OTRA 4LS4A 5CZEB 5IXLA 4NRNA 4Q2UB 1WMIA 5CEGB 1Z8MA 4PX8A 2KC9A 4FXIA 4LSYA 3KXEA 2KC8A
chains in the Genus database with same CATH superfamily

2FHZB 4YY3Y 2A8KA 3G5OB 4ML0B 4MMJA 4MCTB 2A6RA 2DFXE 2KHEA 4FXHA 5CW7B 3KXEA 5CZFC 5IWHA 4FXED 3HI2B 4MMGA 4MCXB 4ML2A 4FBDA 2A6SA 4LTTA 3OEIC 3BPQB 2A6QE 2OTRA 4LS4A 5CZEB 5IXLA 2PD0A 3AO9A 4NRNA 4Q2UB 1WMIA 5CEGB 1Z8MA 4PX8A 1XQBA 2KC9A 4FXIA 4LSYA 2DJHA 3VJ7A 2KC8A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4YY3 Y;  3G5O B;  4ML0 B;  4MMJ A;  4MCT B;  2A6R A;  5CW7 B;  2KHE A;  4FXH A;  5CZF C;  5IWH A;  4FXE D;  4MMG A;  4MCX B;  4ML2 A;  2A6S A;  4LTT A;  3OEI C;  3BPQ B;  2A6Q E;  2OTR A;  4LS4 A;  5CZE B;  5IXL A;  4NRN A;  4Q2U B;  1WMI A;  5CEG B;  1Z8M A;  4PX8 A;  2KC9 A;  4FXI A;  4LSY A;  3KXE A;  2KC8 A; 
#chains in the Genus database with same CATH topology
 2FHZ B;  4YY3 Y;  2A8K A;  3G5O B;  4ML0 B;  4MMJ A;  4MCT B;  2A6R A;  2DFX E;  2KHE A;  4FXH A;  5CW7 B;  3KXE A;  5CZF C;  5IWH A;  4FXE D;  3HI2 B;  4MMG A;  4MCX B;  4ML2 A;  4FBD A;  2A6S A;  4LTT A;  3OEI C;  3BPQ B;  2A6Q E;  2OTR A;  4LS4 A;  5CZE B;  5IXL A;  2PD0 A;  3AO9 A;  4NRN A;  4Q2U B;  1WMI A;  5CEG B;  1Z8M A;  4PX8 A;  1XQB A;  2KC9 A;  4FXI A;  4LSY A;  2DJH A;  3VJ7 A;  2KC8 A; 
#chains in the Genus database with same CATH homology
 4YY3 Y;  3G5O B;  4ML0 B;  4MMJ A;  4MCT B;  2A6R A;  5CW7 B;  2KHE A;  4FXH A;  5CZF C;  5IWH A;  4FXE D;  4MMG A;  4MCX B;  4ML2 A;  2A6S A;  4LTT A;  3OEI C;  3BPQ B;  2A6Q E;  2OTR A;  4LS4 A;  5CZE B;  5IXL A;  4NRN A;  4Q2U B;  1WMI A;  5CEG B;  1Z8M A;  4PX8 A;  2KC9 A;  4FXI A;  4LSY A;  3KXE A;  2KC8 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2A6SA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations