2FHZ | Genus

Total Genus 26

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	26
sequence length	93
structure length	93
Chain Sequence	LKIDQKIRGQMPERGWTEDDIKNTVSNGATGTSFDKRSPKKTPPDYLGRNDPATVYGSPGKYVVVNDRTGEVTQISDKTDPGWVDDSRIQWGN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 93 atoms

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93 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Molecular basis of inhibition of the ribonuclease activity in colicin e5 by its cognate immunity protein pubmed doi rcsb
molecule keywords	Colicin-E5 immunity protein
molecule tags	Immune system, hydrolase
source organism	Escherichia coli
total genus	26
structure length	93
sequence length	93
ec nomenclature	ec 3.1.-.-:
pdb deposition date	2005-12-27

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF12106	Colicin_E5	Colicin E5 ribonuclease domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.2310.30	Alpha Beta	2-Layer Sandwich	YaeB-like fold	YaeB-like fold	2fhzB00

2DFXE 3VJ7A 2FHZB 2DJHA 2A8KA 3AO9A
chains in the Genus database with same CATH superfamily

4Q2UB 2OTRA 5CW7B 4MMJA 4LSYA 2KC9A 4ML2A 2A8KA 2FHZB 5CZEB 2PD0A 3HI2B 4MMGA 3G5OB 2A6QE 2KC8A 2A6SA 2A6RA 5CEGB 3OEIC 4LTTA 4MCXB 4NRNA 4FXED 3VJ7A 4LS4A 4ML0B 4PX8A 2DFXE 1WMIA 4FXIA 4FBDA 1XQBA 5CZFC 5IXLA 4MCTB 5IWHA 4YY3Y 1Z8MA 2DJHA 3KXEA 4FXHA 3AO9A 2KHEA 3BPQB
chains in the Genus database with same CATH topology

2PD0A 3HI2B 2DFXE 4FBDA 3VJ7A 2FHZB 2DJHA 2A8KA 3AO9A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2DFX E;  3VJ7 A;  2FHZ B;  2DJH A;  2A8K A;  3AO9 A; 
#chains in the Genus database with same CATH topology
 4Q2U B;  2OTR A;  5CW7 B;  4MMJ A;  4LSY A;  2KC9 A;  4ML2 A;  2A8K A;  2FHZ B;  5CZE B;  2PD0 A;  3HI2 B;  4MMG A;  3G5O B;  2A6Q E;  2KC8 A;  2A6S A;  2A6R A;  5CEG B;  3OEI C;  4LTT A;  4MCX B;  4NRN A;  4FXE D;  3VJ7 A;  4LS4 A;  4ML0 B;  4PX8 A;  2DFX E;  1WMI A;  4FXI A;  4FBD A;  1XQB A;  5CZF C;  5IXL A;  4MCT B;  5IWH A;  4YY3 Y;  1Z8M A;  2DJH A;  3KXE A;  4FXH A;  3AO9 A;  2KHE A;  3BPQ B; 
#chains in the Genus database with same CATH homology
 2PD0 A;  3HI2 B;  2DFX E;  4FBD A;  3VJ7 A;  2FHZ B;  2DJH A;  2A8K A;  3AO9 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2FHZB

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations