2OTRA

Solution structure of conserved hypothetical protein hp0892 from helicobacter pylori
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
90
structure length
90
Chain Sequence
MLTIETSKKFDKDLKILVKNGFDLKLLYKVVGNLATEQPLAPKYKDHPLKGGLKDFRECHLKPDLLLVYQIKKQENTLFLVRLGSHSELF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of conserved hypothetical protein HP0892 from Helicobacter pylori.
pubmed doi rcsb
molecule tags Structural genomics, unknown function
source organism Helicobacter pylori
molecule keywords Hypothetical protein HP0892
total genus 14
structure length 90
sequence length 90
ec nomenclature
pdb deposition date 2007-02-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05016 ParE_toxin ParE toxin of type II toxin-antitoxin system, parDE
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2310.20 Alpha Beta 2-Layer Sandwich YaeB-like fold RelE-like 2otrA00
2KC8A 4MMJA 4MCXB 3BPQB 4FXED 2KHEA 2A6QE 4ML0B 5CZEB 5CZFC 5IXLA 2A6SA 5IWHA 2A6RA 4FXIA 4MMGA 4MCTB 4YY3Y 4LS4A 3OEIC 1Z8MA 4NRNA 4LSYA 4ML2A 4PX8A 5CW7B 5CEGB 4LTTA 4Q2UB 4FXHA 2OTRA 2KC9A 1WMIA 3G5OB 3KXEA
chains in the Genus database with same CATH superfamily
2KC8A 2PD0A 4MMJA 4MCXB 3HI2B 3BPQB 4FXED 2KHEA 2A6QE 4ML0B 5CZEB 5CZFC 5IXLA 2A6SA 5IWHA 2A6RA 4FXIA 2A8KA 4MMGA 4MCTB 3VJ7A 4YY3Y 4LS4A 3OEIC 2DFXE 1Z8MA 4NRNA 1XQBA 4LSYA 4ML2A 4PX8A 5CW7B 2FHZB 5CEGB 4LTTA 4Q2UB 4FXHA 4FBDA 2DJHA 2OTRA 2KC9A 3AO9A 1WMIA 3G5OB 3KXEA
chains in the Genus database with same CATH topology
2KC8A 4MMJA 4MCXB 3BPQB 4FXED 2KHEA 2A6QE 4ML0B 5CZEB 5CZFC 5IXLA 2A6SA 5IWHA 2A6RA 4FXIA 4MMGA 4MCTB 4YY3Y 4LS4A 3OEIC 1Z8MA 4NRNA 4LSYA 4ML2A 4PX8A 5CW7B 5CEGB 4LTTA 4Q2UB 4FXHA 2OTRA 2KC9A 1WMIA 3G5OB 3KXEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KC8 A;  4MMJ A;  4MCX B;  3BPQ B;  4FXE D;  2KHE A;  2A6Q E;  4ML0 B;  5CZE B;  5CZF C;  5IXL A;  2A6S A;  5IWH A;  2A6R A;  4FXI A;  4MMG A;  4MCT B;  4YY3 Y;  4LS4 A;  3OEI C;  1Z8M A;  4NRN A;  4LSY A;  4ML2 A;  4PX8 A;  5CW7 B;  5CEG B;  4LTT A;  4Q2U B;  4FXH A;  2OTR A;  2KC9 A;  1WMI A;  3G5O B;  3KXE A; 
#chains in the Genus database with same CATH topology
 2KC8 A;  2PD0 A;  4MMJ A;  4MCX B;  3HI2 B;  3BPQ B;  4FXE D;  2KHE A;  2A6Q E;  4ML0 B;  5CZE B;  5CZF C;  5IXL A;  2A6S A;  5IWH A;  2A6R A;  4FXI A;  2A8K A;  4MMG A;  4MCT B;  3VJ7 A;  4YY3 Y;  4LS4 A;  3OEI C;  2DFX E;  1Z8M A;  4NRN A;  1XQB A;  4LSY A;  4ML2 A;  4PX8 A;  5CW7 B;  2FHZ B;  5CEG B;  4LTT A;  4Q2U B;  4FXH A;  4FBD A;  2DJH A;  2OTR A;  2KC9 A;  3AO9 A;  1WMI A;  3G5O B;  3KXE A; 
#chains in the Genus database with same CATH homology
 2KC8 A;  4MMJ A;  4MCX B;  3BPQ B;  4FXE D;  2KHE A;  2A6Q E;  4ML0 B;  5CZE B;  5CZF C;  5IXL A;  2A6S A;  5IWH A;  2A6R A;  4FXI A;  4MMG A;  4MCT B;  4YY3 Y;  4LS4 A;  3OEI C;  1Z8M A;  4NRN A;  4LSY A;  4ML2 A;  4PX8 A;  5CW7 B;  5CEG B;  4LTT A;  4Q2U B;  4FXH A;  2OTR A;  2KC9 A;  1WMI A;  3G5O B;  3KXE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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