2P2W | Genus

Total Genus 128

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	128
sequence length	365
structure length	358
Chain Sequence	MIQKGLEGVKICESSICYLDGINGRLYYRGIPVEELAEKSTFEETAYFLWYGKLPTKSELEEFKRKMADYRELPAEALGILYHLPKNLHYIDVLKIFLSIHEDLREKAIRVASVFPTILAYYYRYSKGKELIRPRKDLSHVENFYYMMFGERNEKIRLLESAFILLMEQDINASTFAALVIASTLSDLYSCIVGALGALKGPLHGGASEKVPPMLEEIGSEDRVEEFVQKCLKEKRKIMGFGHRVYKTYDPRAVFLKRVLQEHFPDSKLFRIASKLEEYIVSNKIKNIYPNVDLYSSVLFEELGFPRNMFTALFATARVVGWTAHVIEYVSDNKLIRPTSEYVGPMDVEYIPIERRDE

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Thermotoga maritima
publication title	Crystal structure of citrate synthase from Thermotoga maritima MSB8 rcsb
molecule keywords	Citrate synthase
total genus	128
structure length	358
sequence length	365
ec nomenclature	ec 2.3.3.-:
pdb deposition date	2007-03-07

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00285	Citrate_synt	Citrate synthase, C-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.230.10	Mainly Alpha	Orthogonal Bundle	Cytochrome p450-Terp; domain 2	Cytochrome P450-Terp, domain 2	2p2wA02
1.10.580.10	Mainly Alpha	Orthogonal Bundle	Citrate Synthase; domain 1	Citrate Synthase, domain 1	2p2wA01

4CSCA 1AMZA 4JAFA 1CSHA 1CSIA 1VGPA 1VGMA 4JAGA 1CSCA 2C6XA 4G6BA 4TVMA 1NXGA 2IFCA 1A59A 2IBPA 1CSSA 5CTSA 1IOMA 2CTSA 1AL6A 1OWCA 3HWKA 5CSCA 4JADA 5CSCB 3TQGA 2R9EA 6CSCA 2H12A 4JAEA 1CSRA 4CTSA 2R26A 3ENJA 4E6YA 6CTSA 4XGHA 1O7XA 2CSCA 3O8JA 3CSCA 2P2WA 3MSUA 4YBOA 1CTSA 1OWBA 1NXEA 1IXEA 1AJ8A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 4CSC A;  1AMZ A;  4JAF A;  1CSH A;  1CSI A;  1VGP A;  1VGM A;  4JAG A;  1CSC A;  2C6X A;  4G6B A;  4TVM A;  1NXG A;  2IFC A;  1A59 A;  2IBP A;  1CSS A;  5CTS A;  1IOM A;  2CTS A;  1AL6 A;  1OWC A;  3HWK A;  5CSC A;  4JAD A;  5CSC B;  3TQG A;  2R9E A;  6CSC A;  2H12 A;  4JAE A;  1CSR A;  4CTS A;  2R26 A;  3ENJ A;  4E6Y A;  6CTS A;  4XGH A;  1O7X A;  2CSC A;  3O8J A;  3CSC A;  2P2W A;  3MSU A;  4YBO A;  1CTS A;  1OWB A;  1NXE A;  1IXE A;  1AJ8 A; 
#chains in the Genus database with same CATH topology
 4CSC A;  1AMZ A;  4JAF A;  1CSH A;  1CSI A;  1VGP A;  1VGM A;  4JAG A;  1CSC A;  2C6X A;  4G6B A;  4TVM A;  1NXG A;  2IFC A;  1A59 A;  2IBP A;  1CSS A;  5CTS A;  1IOM A;  2CTS A;  1AL6 A;  1OWC A;  3HWK A;  5CSC A;  4JAD A;  5CSC B;  3TQG A;  2R9E A;  6CSC A;  2H12 A;  4JAE A;  1CSR A;  4CTS A;  2R26 A;  3ENJ A;  4E6Y A;  6CTS A;  4XGH A;  1O7X A;  2CSC A;  3O8J A;  3CSC A;  2P2W A;  3MSU A;  4YBO A;  1CTS A;  1OWB A;  1NXE A;  1IXE A;  1AJ8 A; 
#chains in the Genus database with same CATH homology
 4CSC A;  1AMZ A;  4JAF A;  1CSH A;  1CSI A;  1VGP A;  1VGM A;  4JAG A;  1CSC A;  2C6X A;  4G6B A;  4TVM A;  1NXG A;  2IFC A;  1A59 A;  2IBP A;  1CSS A;  5CTS A;  1IOM A;  2CTS A;  1AL6 A;  1OWC A;  3HWK A;  5CSC A;  4JAD A;  5CSC B;  3TQG A;  2R9E A;  6CSC A;  2H12 A;  4JAE A;  1CSR A;  4CTS A;  2R26 A;  3ENJ A;  4E6Y A;  6CTS A;  4XGH A;  1O7X A;  2CSC A;  3O8J A;  3CSC A;  2P2W A;  3MSU A;  4YBO A;  1CTS A;  1OWB A;  1NXE A;  1IXE A;  1AJ8 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2P2WA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations