The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
60
|
sequence length |
246
|
structure length |
246
|
Chain Sequence |
HIAIDRVGIKAIRHPVVVADKGGGSQHTVAQFNMYVNLPHNFKGTHMSRFVEILNSHEREISVESFEEILRSMVSRLESDSGHIEMAFPYFINKSAPVSGVKSLLDYEVTFIGEIKHGNQYSFTMKVIVPVTSLCPCSKKISDYGAHNQRSHVTISVRTNSFIWIEDIIRIAEEQASCELYGLLKRPDEKYVTERAYNNPKFVEDIVRDVAEVLNHDDRIDAYIVESENFESIHNHSAYALIERDK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Structural genomics, unknown function
|
| molecule keywords |
UPF0343 protein NE1163
|
| publication title |
The crystal structure of DUF198 from Nitrosomonas europaea ATCC 19718.
rcsb |
| source organism |
Nitrosomonas europaea atcc 19718
|
| total genus |
60
|
| structure length |
246
|
| sequence length |
246
|
| ec nomenclature |
ec
3.5.4.16: GTP cyclohydrolase I. |
| pdb deposition date | 2007-09-04 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02649 | GCHY-1 | Type I GTP cyclohydrolase folE2 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Roll | Urate Oxidase | Urate Oxidase; |
#chains in the Genus database with same CATH superfamily 2ZKB A; 4CW2 A; 3PLM A; 5LL1 A; 4PR8 A; 3WLV A; 3PLI A; 3PKS A; 4D12 A; 3BK8 A; 3PKK A; 4D13 A; 4MB8 A; 4R8X A; 5K9G A; 3PKL A; 4R99 A; 3PK5 A; 1WRR A; 2IC0 A; 4N9S A; 4CW0 A; 3PKT A; 2R5R A; 3P9O A; 3L8W A; 3OBP A; 3LBG A; 2ICQ A; 1XT4 A; 3PKU A; 3PK8 A; 2ZKA A; 1R51 A; 4POE A; 1WS2 A; 3PKF A; 1R56 A; 3PK4 A; 2FUB A; 5FRC A; 5K95 A; 2YZE A; 4N3M A; 3BJP A; 4D19 A; 1VAY A; 2PES A; 1XY3 A; 2FXL A; 3PK3 A; 4CW6 A; 1VAX A; 3F2M A; 1J2G A; 2YZD A; 4FSK A; 4PUV A; 3PK6 A; 3L9G A; 2YZB A; 1XXJ A; 3CKU A; 3P9F A; 4N9M A; 3PLH A; 4OQC A; 1R4U A; 1R4S A; 3GKO A; 3CKS A; 5AYJ A; 3PLG A; 1WS3 A; 5M98 A; 3PLE A; 4OP6 A; 3PLJ A; 3LD4 A; 2YZC A; 4D17 A; 3PKH A; 4OP9 A; 3PKG A; 4XFP A; 2IBA A; 3D2O A; 3PJK A; 4N9V A; 4CW3 A; #chains in the Genus database with same CATH topology 2ZKB A; 4CW2 A; 3PLM A; 5LL1 A; 4PR8 A; 3WLV A; 3PLI A; 3PKS A; 4D12 A; 3BK8 A; 3PKK A; 4D13 A; 4MB8 A; 4R8X A; 5K9G A; 3PKL A; 4R99 A; 3PK5 A; 1WRR A; 2IC0 A; 4N9S A; 4CW0 A; 3PKT A; 2R5R A; 3P9O A; 3L8W A; 3OBP A; 3LBG A; 2ICQ A; 1XT4 A; 3PKU A; 3PK8 A; 2ZKA A; 1R51 A; 4POE A; 1WS2 A; 3PKF A; 1R56 A; 3PK4 A; 2FUB A; 5FRC A; 5K95 A; 2YZE A; 4N3M A; 3BJP A; 4D19 A; 1VAY A; 2PES A; 1XY3 A; 2FXL A; 3PK3 A; 4CW6 A; 1VAX A; 3F2M A; 1J2G A; 2YZD A; 4FSK A; 4PUV A; 3PK6 A; 3L9G A; 2YZB A; 1XXJ A; 3CKU A; 3P9F A; 4N9M A; 3PLH A; 4OQC A; 1R4U A; 1R4S A; 3GKO A; 3CKS A; 5AYJ A; 3PLG A; 1WS3 A; 5M98 A; 3PLE A; 4OP6 A; 3PLJ A; 3LD4 A; 2YZC A; 4D17 A; 3PKH A; 4OP9 A; 3PKG A; 4XFP A; 2IBA A; 3D2O A; 3PJK A; 4N9V A; 4CW3 A; #chains in the Genus database with same CATH homology 2ZKB A; 4CW2 A; 3PLM A; 5LL1 A; 4PR8 A; 3WLV A; 3PLI A; 3PKS A; 4D12 A; 3BK8 A; 3PKK A; 4D13 A; 4MB8 A; 4R8X A; 5K9G A; 3PKL A; 4R99 A; 3PK5 A; 1WRR A; 2IC0 A; 4N9S A; 4CW0 A; 3PKT A; 2R5R A; 3P9O A; 3L8W A; 3OBP A; 3LBG A; 2ICQ A; 1XT4 A; 3PKU A; 3PK8 A; 2ZKA A; 1R51 A; 4POE A; 1WS2 A; 3PKF A; 1R56 A; 3PK4 A; 2FUB A; 5FRC A; 5K95 A; 2YZE A; 4N3M A; 3BJP A; 4D19 A; 1VAY A; 2PES A; 1XY3 A; 2FXL A; 3PK3 A; 4CW6 A; 1VAX A; 3F2M A; 1J2G A; 2YZD A; 4FSK A; 4PUV A; 3PK6 A; 3L9G A; 2YZB A; 1XXJ A; 3CKU A; 3P9F A; 4N9M A; 3PLH A; 4OQC A; 1R4U A; 1R4S A; 3GKO A; 3CKS A; 5AYJ A; 3PLG A; 1WS3 A; 5M98 A; 3PLE A; 4OP6 A; 3PLJ A; 3LD4 A; 2YZC A; 4D17 A; 3PKH A; 4OP9 A; 3PKG A; 4XFP A; 2IBA A; 3D2O A; 3PJK A; 4N9V A; 4CW3 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
