The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
82
|
sequence length |
295
|
structure length |
295
|
Chain Sequence |
SAVKAARYGKDNVRVYKVHKDEKTGVQTVYEMTVCVLLEGEIETSYTKADNSVIVATDSIKNTIYITAKQNPVTPPELFGSILGTHFIEKYNHIHAAHVNIVCHRWTRMDIDGKPHPHSFIRDSEEKRNVQVDVVEGKGIDIKSSLSGLTVLKSTNSQFWGFLRDEYTTLKETWDRILSTDVDATWQWKNFSGLQEVRSHVPKFDATWATAREVTLKTFAEDNSASVQATMYKMAEQILARQQLIETVEYSLPNKHYFEIDLSWHKGLQNTGKNAEVFAPQSDPNGLIKCTVGRS
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Oxidoreductase
|
| molecule keywords |
Uricase
|
| publication title |
Near-atomic resolution structures of urate oxidase complexed with its substrate and analogues: the protonation state of the ligand.
pubmed doi rcsb |
| source organism |
Aspergillus flavus
|
| total genus |
82
|
| structure length |
295
|
| sequence length |
295
|
| ec nomenclature |
ec
1.7.3.3: Factor independent urate hydroxylase. |
| pdb deposition date | 2010-01-05 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01014 | Uricase | Uricase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Roll | Urate Oxidase | Urate Oxidase; |
#chains in the Genus database with same CATH superfamily 4D17 A; 3CKU A; 4N9M A; 3PJK A; 4R99 A; 4FSK A; 3PKF A; 4CW0 A; 3L8W A; 2YZB A; 3PLG A; 4PR8 A; 4POE A; 4N3M A; 4CW6 A; 1R51 A; 5M98 A; 3PK6 A; 3WLV A; 3LD4 A; 2FXL A; 3PKS A; 3PKT A; 1R56 A; 3BK8 A; 2PES A; 3PLJ A; 2ICQ A; 5AYJ A; 4OQC A; 2YZC A; 4PUV A; 5FRC A; 2ZKB A; 4CW2 A; 1WS2 A; 3PLI A; 4OP6 A; 3BJP A; 3PK3 A; 1VAY A; 1XY3 A; 2ZKA A; 3P9F A; 3CKS A; 3PKG A; 3PK5 A; 3OBP A; 3GKO A; 3PLE A; 2R5R A; 1R4S A; 3PLH A; 4D12 A; 2IC0 A; 3PKH A; 3PKU A; 4MB8 A; 1VAX A; 4OP9 A; 2YZE A; 3L9G A; 5K95 A; 3PKK A; 3PKL A; 2FUB A; 4N9V A; 1WS3 A; 4R8X A; 2IBA A; 5K9G A; 1XT4 A; 4D13 A; 1WRR A; 3D2O A; 3PLM A; 3PK4 A; 3P9O A; 3PK8 A; 4N9S A; 5LL1 A; 1XXJ A; 3LBG A; 4XFP A; 3F2M A; 4D19 A; 2YZD A; 1J2G A; 4CW3 A; 1R4U A; #chains in the Genus database with same CATH topology 4D17 A; 3CKU A; 4N9M A; 3PJK A; 4R99 A; 4FSK A; 3PKF A; 4CW0 A; 3L8W A; 2YZB A; 3PLG A; 4PR8 A; 4POE A; 4N3M A; 4CW6 A; 1R51 A; 5M98 A; 3PK6 A; 3WLV A; 3LD4 A; 2FXL A; 3PKS A; 3PKT A; 1R56 A; 3BK8 A; 2PES A; 3PLJ A; 2ICQ A; 5AYJ A; 4OQC A; 2YZC A; 4PUV A; 5FRC A; 2ZKB A; 4CW2 A; 1WS2 A; 3PLI A; 4OP6 A; 3BJP A; 3PK3 A; 1VAY A; 1XY3 A; 2ZKA A; 3P9F A; 3CKS A; 3PKG A; 3PK5 A; 3OBP A; 3GKO A; 3PLE A; 2R5R A; 1R4S A; 3PLH A; 4D12 A; 2IC0 A; 3PKH A; 3PKU A; 4MB8 A; 1VAX A; 4OP9 A; 2YZE A; 3L9G A; 5K95 A; 3PKK A; 3PKL A; 2FUB A; 4N9V A; 1WS3 A; 4R8X A; 2IBA A; 5K9G A; 1XT4 A; 4D13 A; 1WRR A; 3D2O A; 3PLM A; 3PK4 A; 3P9O A; 3PK8 A; 4N9S A; 5LL1 A; 1XXJ A; 3LBG A; 4XFP A; 3F2M A; 4D19 A; 2YZD A; 1J2G A; 4CW3 A; 1R4U A; #chains in the Genus database with same CATH homology 4D17 A; 3CKU A; 4N9M A; 3PJK A; 4R99 A; 4FSK A; 3PKF A; 4CW0 A; 3L8W A; 2YZB A; 3PLG A; 4PR8 A; 4POE A; 4N3M A; 4CW6 A; 1R51 A; 5M98 A; 3PK6 A; 3WLV A; 3LD4 A; 2FXL A; 3PKS A; 3PKT A; 1R56 A; 3BK8 A; 2PES A; 3PLJ A; 2ICQ A; 5AYJ A; 4OQC A; 2YZC A; 4PUV A; 5FRC A; 2ZKB A; 4CW2 A; 1WS2 A; 3PLI A; 4OP6 A; 3BJP A; 3PK3 A; 1VAY A; 1XY3 A; 2ZKA A; 3P9F A; 3CKS A; 3PKG A; 3PK5 A; 3OBP A; 3GKO A; 3PLE A; 2R5R A; 1R4S A; 3PLH A; 4D12 A; 2IC0 A; 3PKH A; 3PKU A; 4MB8 A; 1VAX A; 4OP9 A; 2YZE A; 3L9G A; 5K95 A; 3PKK A; 3PKL A; 2FUB A; 4N9V A; 1WS3 A; 4R8X A; 2IBA A; 5K9G A; 1XT4 A; 4D13 A; 1WRR A; 3D2O A; 3PLM A; 3PK4 A; 3P9O A; 3PK8 A; 4N9S A; 5LL1 A; 1XXJ A; 3LBG A; 4XFP A; 3F2M A; 4D19 A; 2YZD A; 1J2G A; 4CW3 A; 1R4U A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
