3P9OA

Aerobic ternary complex of urate oxidase with azide and chloride
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
295
structure length
295
Chain Sequence
SAVKAARYGKDNVRVYKVHKDEKTGVQTVYEMTVCVLLEGEIETSYTKADNSVIVATDSIKNTIYITAKQNPVTPPELFGSILGTHFIEKYNHIHAAHVNIVCHRWTRMDIDGKPHPHSFIRDSEEKRNVQVDVVEGKGIDIKSSLSGLTVLKSTNSQFWGFLRDEYTTLKETWDRILSTDVDATWQWKNFSGLQEVRSHVPKFDATWATAREVTLKTFAEDNSASVQATMYKMAEQILARQQLIETVEYSLPNKHYFEIDLSWHKGLQNTGKNAEVFAPQSDPNGLIKCTVGRS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Oxygen binding
molecule keywords Uricase
publication title Azide and Cyanide Show Different Inhibition Modes to Urate Oxidase
rcsb
source organism Aspergillus flavus
total genus 82
structure length 295
sequence length 295
ec nomenclature ec 1.7.3.3: Factor independent urate hydroxylase.
pdb deposition date 2010-10-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01014 Uricase Uricase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.270.10 Alpha Beta Roll Urate Oxidase Urate Oxidase; 3p9oA00
3PK5A 2YZDA 4N9MA 3BJPA 3P9FA 1WS2A 3LD4A 3PKUA 2ICQA 4POEA 3PK4A 3PKSA 3PKTA 5K9GA 4N3MA 2ZKBA 3PKGA 1R56A 2YZEA 4R99A 1J2GA 3PK8A 5LL1A 4D19A 4PR8A 4CW6A 2IBAA 2FXLA 3PKLA 3L9GA 5M98A 3OBPA 2FUBA 3PKFA 4XFPA 3L8WA 3PKKA 4OP6A 4PUVA 5AYJA 5FRCA 3PLGA 1XXJA 4D12A 4D17A 1WS3A 3D2OA 1XT4A 1WRRA 2YZCA 2R5RA 3PK3A 3PJKA 3PKHA 5K95A 4MB8A 2IC0A 1R51A 2PESA 4OP9A 4CW0A 1VAXA 3PLMA 3WLVA 3F2MA 4CW3A 2ZKAA 1R4SA 3GKOA 3PLJA 4D13A 4N9VA 4OQCA 1R4UA 2YZBA 3CKSA 4R8XA 3BK8A 1XY3A 3PK6A 3P9OA 1VAYA 4CW2A 3CKUA 3PLIA 4N9SA 3PLHA 3PLEA 4FSKA 3LBGA
chains in the Genus database with same CATH superfamily
3PK5A 2YZDA 4N9MA 3BJPA 3P9FA 1WS2A 3LD4A 3PKUA 2ICQA 4POEA 3PK4A 3PKSA 3PKTA 5K9GA 4N3MA 2ZKBA 3PKGA 1R56A 2YZEA 4R99A 1J2GA 3PK8A 5LL1A 4D19A 4PR8A 4CW6A 2IBAA 2FXLA 3PKLA 3L9GA 5M98A 3OBPA 2FUBA 3PKFA 4XFPA 3L8WA 3PKKA 4OP6A 4PUVA 5AYJA 5FRCA 3PLGA 1XXJA 4D12A 4D17A 1WS3A 3D2OA 1XT4A 1WRRA 2YZCA 2R5RA 3PK3A 3PJKA 3PKHA 5K95A 4MB8A 2IC0A 1R51A 2PESA 4OP9A 4CW0A 1VAXA 3PLMA 3WLVA 3F2MA 4CW3A 2ZKAA 1R4SA 3GKOA 3PLJA 4D13A 4N9VA 4OQCA 1R4UA 2YZBA 3CKSA 4R8XA 3BK8A 1XY3A 3PK6A 3P9OA 1VAYA 4CW2A 3CKUA 3PLIA 4N9SA 3PLHA 3PLEA 4FSKA 3LBGA
chains in the Genus database with same CATH topology
3PK5A 2YZDA 4N9MA 3BJPA 3P9FA 1WS2A 3LD4A 3PKUA 2ICQA 4POEA 3PK4A 3PKSA 3PKTA 5K9GA 4N3MA 2ZKBA 3PKGA 1R56A 2YZEA 4R99A 1J2GA 3PK8A 5LL1A 4D19A 4PR8A 4CW6A 2IBAA 2FXLA 3PKLA 3L9GA 5M98A 3OBPA 2FUBA 3PKFA 4XFPA 3L8WA 3PKKA 4OP6A 4PUVA 5AYJA 5FRCA 3PLGA 1XXJA 4D12A 4D17A 1WS3A 3D2OA 1XT4A 1WRRA 2YZCA 2R5RA 3PK3A 3PJKA 3PKHA 5K95A 4MB8A 2IC0A 1R51A 2PESA 4OP9A 4CW0A 1VAXA 3PLMA 3WLVA 3F2MA 4CW3A 2ZKAA 1R4SA 3GKOA 3PLJA 4D13A 4N9VA 4OQCA 1R4UA 2YZBA 3CKSA 4R8XA 3BK8A 1XY3A 3PK6A 3P9OA 1VAYA 4CW2A 3CKUA 3PLIA 4N9SA 3PLHA 3PLEA 4FSKA 3LBGA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3PK5 A;  2YZD A;  4N9M A;  3BJP A;  3P9F A;  1WS2 A;  3LD4 A;  3PKU A;  2ICQ A;  4POE A;  3PK4 A;  3PKS A;  3PKT A;  5K9G A;  4N3M A;  2ZKB A;  3PKG A;  1R56 A;  2YZE A;  4R99 A;  1J2G A;  3PK8 A;  5LL1 A;  4D19 A;  4PR8 A;  4CW6 A;  2IBA A;  2FXL A;  3PKL A;  3L9G A;  5M98 A;  3OBP A;  2FUB A;  3PKF A;  4XFP A;  3L8W A;  3PKK A;  4OP6 A;  4PUV A;  5AYJ A;  5FRC A;  3PLG A;  1XXJ A;  4D12 A;  4D17 A;  1WS3 A;  3D2O A;  1XT4 A;  1WRR A;  2YZC A;  2R5R A;  3PK3 A;  3PJK A;  3PKH A;  5K95 A;  4MB8 A;  2IC0 A;  1R51 A;  2PES A;  4OP9 A;  4CW0 A;  1VAX A;  3PLM A;  3WLV A;  3F2M A;  4CW3 A;  2ZKA A;  1R4S A;  3GKO A;  3PLJ A;  4D13 A;  4N9V A;  4OQC A;  1R4U A;  2YZB A;  3CKS A;  4R8X A;  3BK8 A;  1XY3 A;  3PK6 A;  3P9O A;  1VAY A;  4CW2 A;  3CKU A;  3PLI A;  4N9S A;  3PLH A;  3PLE A;  4FSK A;  3LBG A; 
#chains in the Genus database with same CATH topology
 3PK5 A;  2YZD A;  4N9M A;  3BJP A;  3P9F A;  1WS2 A;  3LD4 A;  3PKU A;  2ICQ A;  4POE A;  3PK4 A;  3PKS A;  3PKT A;  5K9G A;  4N3M A;  2ZKB A;  3PKG A;  1R56 A;  2YZE A;  4R99 A;  1J2G A;  3PK8 A;  5LL1 A;  4D19 A;  4PR8 A;  4CW6 A;  2IBA A;  2FXL A;  3PKL A;  3L9G A;  5M98 A;  3OBP A;  2FUB A;  3PKF A;  4XFP A;  3L8W A;  3PKK A;  4OP6 A;  4PUV A;  5AYJ A;  5FRC A;  3PLG A;  1XXJ A;  4D12 A;  4D17 A;  1WS3 A;  3D2O A;  1XT4 A;  1WRR A;  2YZC A;  2R5R A;  3PK3 A;  3PJK A;  3PKH A;  5K95 A;  4MB8 A;  2IC0 A;  1R51 A;  2PES A;  4OP9 A;  4CW0 A;  1VAX A;  3PLM A;  3WLV A;  3F2M A;  4CW3 A;  2ZKA A;  1R4S A;  3GKO A;  3PLJ A;  4D13 A;  4N9V A;  4OQC A;  1R4U A;  2YZB A;  3CKS A;  4R8X A;  3BK8 A;  1XY3 A;  3PK6 A;  3P9O A;  1VAY A;  4CW2 A;  3CKU A;  3PLI A;  4N9S A;  3PLH A;  3PLE A;  4FSK A;  3LBG A; 
#chains in the Genus database with same CATH homology
 3PK5 A;  2YZD A;  4N9M A;  3BJP A;  3P9F A;  1WS2 A;  3LD4 A;  3PKU A;  2ICQ A;  4POE A;  3PK4 A;  3PKS A;  3PKT A;  5K9G A;  4N3M A;  2ZKB A;  3PKG A;  1R56 A;  2YZE A;  4R99 A;  1J2G A;  3PK8 A;  5LL1 A;  4D19 A;  4PR8 A;  4CW6 A;  2IBA A;  2FXL A;  3PKL A;  3L9G A;  5M98 A;  3OBP A;  2FUB A;  3PKF A;  4XFP A;  3L8W A;  3PKK A;  4OP6 A;  4PUV A;  5AYJ A;  5FRC A;  3PLG A;  1XXJ A;  4D12 A;  4D17 A;  1WS3 A;  3D2O A;  1XT4 A;  1WRR A;  2YZC A;  2R5R A;  3PK3 A;  3PJK A;  3PKH A;  5K95 A;  4MB8 A;  2IC0 A;  1R51 A;  2PES A;  4OP9 A;  4CW0 A;  1VAX A;  3PLM A;  3WLV A;  3F2M A;  4CW3 A;  2ZKA A;  1R4S A;  3GKO A;  3PLJ A;  4D13 A;  4N9V A;  4OQC A;  1R4U A;  2YZB A;  3CKS A;  4R8X A;  3BK8 A;  1XY3 A;  3PK6 A;  3P9O A;  1VAY A;  4CW2 A;  3CKU A;  3PLI A;  4N9S A;  3PLH A;  3PLE A;  4FSK A;  3LBG A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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