4FSKA

Urate oxidase-azide complex in anaerobic conditions
Total Genus 80
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
295
structure length
295
Chain Sequence
SAVKAARYGKDNVRVYKVHKDEKTGVQTVYEMTVCVLLEGEIETSYTKADNSVIVATDSIKNTIYITAKQNPVTPPELFGSILGTHFIEKYNHIHAAHVNIVCHRWTRMDIDGKPHPHSFIRDSEEKRNVQVDVVEGKGIDIKSSLSGLTVLKSTNSQFWGFLRDEYTTLKETWDRILSTDVDATWQWKNFSGLQEVRSHVPKFDATWATAREVTLKTFAEDNSASVQATMYKMAEQILARQQLIETVEYSLPNKHYFEIDLSWHKGLQNTGKNAEVFAPQSDPNGLIKCTVGRS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Oxidoreductase
molecule keywords Uricase
publication title Azide and Cyanide Have Different Inhibition Modes of Urate Oxidase
rcsb
source organism Aspergillus flavus
total genus 80
structure length 295
sequence length 295
ec nomenclature ec 1.7.3.3: Factor independent urate hydroxylase.
pdb deposition date 2012-06-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01014 Uricase Uricase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.270.10 Alpha Beta Roll Urate Oxidase Urate Oxidase; 4fskA00
4N3MA 1R4UA 4R99A 5M98A 3LBGA 3PLMA 3PK4A 3GKOA 1VAXA 3PKSA 4OP6A 4CW0A 3CKUA 5LL1A 4POEA 2FXLA 3PKTA 3PJKA 3PKGA 2FUBA 4N9SA 4CW6A 5FRCA 3PK8A 3D2OA 4OQCA 3PK3A 1WS2A 3PLHA 3PLJA 3BK8A 3P9FA 2YZCA 3PLIA 3BJPA 2ZKBA 3PK6A 4D13A 3PLEA 3L9GA 3F2MA 3CKSA 1VAYA 2R5RA 5K9GA 2YZDA 4R8XA 2IC0A 1J2GA 1R4SA 3PKLA 4N9VA 4CW2A 4D12A 1WRRA 3WLVA 2IBAA 1R51A 4FSKA 5K95A 4D17A 4MB8A 3LD4A 1XT4A 4D19A 2YZBA 4N9MA 1XXJA 2ICQA 3PK5A 4PR8A 2ZKAA 3PKKA 2PESA 4XFPA 1WS3A 3OBPA 4PUVA 3PKFA 1R56A 4CW3A 1XY3A 2YZEA 3P9OA 3PKUA 3PLGA 3PKHA 5AYJA 4OP9A 3L8WA
chains in the Genus database with same CATH superfamily
4N3MA 1R4UA 4R99A 5M98A 3LBGA 3PLMA 3PK4A 3GKOA 1VAXA 3PKSA 4OP6A 4CW0A 3CKUA 5LL1A 4POEA 2FXLA 3PKTA 3PJKA 3PKGA 2FUBA 4N9SA 4CW6A 5FRCA 3PK8A 3D2OA 4OQCA 3PK3A 1WS2A 3PLHA 3PLJA 3BK8A 3P9FA 2YZCA 3PLIA 3BJPA 2ZKBA 3PK6A 4D13A 3PLEA 3L9GA 3F2MA 3CKSA 1VAYA 2R5RA 5K9GA 2YZDA 4R8XA 2IC0A 1J2GA 1R4SA 3PKLA 4N9VA 4CW2A 4D12A 1WRRA 3WLVA 2IBAA 1R51A 4FSKA 5K95A 4D17A 4MB8A 3LD4A 1XT4A 4D19A 2YZBA 4N9MA 1XXJA 2ICQA 3PK5A 4PR8A 2ZKAA 3PKKA 2PESA 4XFPA 1WS3A 3OBPA 4PUVA 3PKFA 1R56A 4CW3A 1XY3A 2YZEA 3P9OA 3PKUA 3PLGA 3PKHA 5AYJA 4OP9A 3L8WA
chains in the Genus database with same CATH topology
4N3MA 1R4UA 4R99A 5M98A 3LBGA 3PLMA 3PK4A 3GKOA 1VAXA 3PKSA 4OP6A 4CW0A 3CKUA 5LL1A 4POEA 2FXLA 3PKTA 3PJKA 3PKGA 2FUBA 4N9SA 4CW6A 5FRCA 3PK8A 3D2OA 4OQCA 3PK3A 1WS2A 3PLHA 3PLJA 3BK8A 3P9FA 2YZCA 3PLIA 3BJPA 2ZKBA 3PK6A 4D13A 3PLEA 3L9GA 3F2MA 3CKSA 1VAYA 2R5RA 5K9GA 2YZDA 4R8XA 2IC0A 1J2GA 1R4SA 3PKLA 4N9VA 4CW2A 4D12A 1WRRA 3WLVA 2IBAA 1R51A 4FSKA 5K95A 4D17A 4MB8A 3LD4A 1XT4A 4D19A 2YZBA 4N9MA 1XXJA 2ICQA 3PK5A 4PR8A 2ZKAA 3PKKA 2PESA 4XFPA 1WS3A 3OBPA 4PUVA 3PKFA 1R56A 4CW3A 1XY3A 2YZEA 3P9OA 3PKUA 3PLGA 3PKHA 5AYJA 4OP9A 3L8WA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 4N3M A;  1R4U A;  4R99 A;  5M98 A;  3LBG A;  3PLM A;  3PK4 A;  3GKO A;  1VAX A;  3PKS A;  4OP6 A;  4CW0 A;  3CKU A;  5LL1 A;  4POE A;  2FXL A;  3PKT A;  3PJK A;  3PKG A;  2FUB A;  4N9S A;  4CW6 A;  5FRC A;  3PK8 A;  3D2O A;  4OQC A;  3PK3 A;  1WS2 A;  3PLH A;  3PLJ A;  3BK8 A;  3P9F A;  2YZC A;  3PLI A;  3BJP A;  2ZKB A;  3PK6 A;  4D13 A;  3PLE A;  3L9G A;  3F2M A;  3CKS A;  1VAY A;  2R5R A;  5K9G A;  2YZD A;  4R8X A;  2IC0 A;  1J2G A;  1R4S A;  3PKL A;  4N9V A;  4CW2 A;  4D12 A;  1WRR A;  3WLV A;  2IBA A;  1R51 A;  4FSK A;  5K95 A;  4D17 A;  4MB8 A;  3LD4 A;  1XT4 A;  4D19 A;  2YZB A;  4N9M A;  1XXJ A;  2ICQ A;  3PK5 A;  4PR8 A;  2ZKA A;  3PKK A;  2PES A;  4XFP A;  1WS3 A;  3OBP A;  4PUV A;  3PKF A;  1R56 A;  4CW3 A;  1XY3 A;  2YZE A;  3P9O A;  3PKU A;  3PLG A;  3PKH A;  5AYJ A;  4OP9 A;  3L8W A; 
#chains in the Genus database with same CATH topology
 4N3M A;  1R4U A;  4R99 A;  5M98 A;  3LBG A;  3PLM A;  3PK4 A;  3GKO A;  1VAX A;  3PKS A;  4OP6 A;  4CW0 A;  3CKU A;  5LL1 A;  4POE A;  2FXL A;  3PKT A;  3PJK A;  3PKG A;  2FUB A;  4N9S A;  4CW6 A;  5FRC A;  3PK8 A;  3D2O A;  4OQC A;  3PK3 A;  1WS2 A;  3PLH A;  3PLJ A;  3BK8 A;  3P9F A;  2YZC A;  3PLI A;  3BJP A;  2ZKB A;  3PK6 A;  4D13 A;  3PLE A;  3L9G A;  3F2M A;  3CKS A;  1VAY A;  2R5R A;  5K9G A;  2YZD A;  4R8X A;  2IC0 A;  1J2G A;  1R4S A;  3PKL A;  4N9V A;  4CW2 A;  4D12 A;  1WRR A;  3WLV A;  2IBA A;  1R51 A;  4FSK A;  5K95 A;  4D17 A;  4MB8 A;  3LD4 A;  1XT4 A;  4D19 A;  2YZB A;  4N9M A;  1XXJ A;  2ICQ A;  3PK5 A;  4PR8 A;  2ZKA A;  3PKK A;  2PES A;  4XFP A;  1WS3 A;  3OBP A;  4PUV A;  3PKF A;  1R56 A;  4CW3 A;  1XY3 A;  2YZE A;  3P9O A;  3PKU A;  3PLG A;  3PKH A;  5AYJ A;  4OP9 A;  3L8W A; 
#chains in the Genus database with same CATH homology
 4N3M A;  1R4U A;  4R99 A;  5M98 A;  3LBG A;  3PLM A;  3PK4 A;  3GKO A;  1VAX A;  3PKS A;  4OP6 A;  4CW0 A;  3CKU A;  5LL1 A;  4POE A;  2FXL A;  3PKT A;  3PJK A;  3PKG A;  2FUB A;  4N9S A;  4CW6 A;  5FRC A;  3PK8 A;  3D2O A;  4OQC A;  3PK3 A;  1WS2 A;  3PLH A;  3PLJ A;  3BK8 A;  3P9F A;  2YZC A;  3PLI A;  3BJP A;  2ZKB A;  3PK6 A;  4D13 A;  3PLE A;  3L9G A;  3F2M A;  3CKS A;  1VAY A;  2R5R A;  5K9G A;  2YZD A;  4R8X A;  2IC0 A;  1J2G A;  1R4S A;  3PKL A;  4N9V A;  4CW2 A;  4D12 A;  1WRR A;  3WLV A;  2IBA A;  1R51 A;  4FSK A;  5K95 A;  4D17 A;  4MB8 A;  3LD4 A;  1XT4 A;  4D19 A;  2YZB A;  4N9M A;  1XXJ A;  2ICQ A;  3PK5 A;  4PR8 A;  2ZKA A;  3PKK A;  2PES A;  4XFP A;  1WS3 A;  3OBP A;  4PUV A;  3PKF A;  1R56 A;  4CW3 A;  1XY3 A;  2YZE A;  3P9O A;  3PKU A;  3PLG A;  3PKH A;  5AYJ A;  4OP9 A;  3L8W A;
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite