3AWU | Genus

Total Genus 103

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	103
sequence length	278
structure length	278
Chain Sequence	TVRKNQATLTADEKRRFVAAVLELKRSGRYDEFVRTHNEFIMSDTDSGERTGHRSPSFLPWHRRFLLDFEQALQSVDSSVTLPYWDWSADRTVRASLWAPDFLGGTGRSTDGRVMDGPFAASTGNWPINVRVDSRTYLRRSLGGSVAELPTRAEVESVLAISAYDLPPYNSASEGFRNHLEGWRGVNLHNRVHVWVGGQMATGVSPNDPVFWLHHAYVDKLWAEWQRRHPDSAYVPTGGTPDVVDLNETMKPWNTVRPADLLDHTAYYTFDALEHHHH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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Viewer cachePut cache://localLOAD_/file/5cfe4cec8a380fe4fa19c145/pdb.gz

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The Resolver thinks Pdb

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Time for openFile(/file/5cfe4cec8a380fe4fa19c145/pdb.gz): 1928 ms

reading 278 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

278 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 29 ms

Adding embedded #jmolscript: select ({0:277});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase/metal transport
source organism	Streptomyces castaneoglobisporus
publication title	A molecular mechanism for copper transportation to tyrosinase that is assisted by a metallochaperone, caddie protein pubmed doi rcsb
molecule keywords	Tyrosinase
total genus	103
structure length	278
sequence length	278
ec nomenclature	ec 1.14.18.1: Tyrosinase.
pdb deposition date	2011-03-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00264	Tyrosinase	Common central domain of tyrosinase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1280.10	Mainly Alpha	Orthogonal Bundle	di-copper center containing domain from catechol oxidase	Di-copper center containing domain from catechol oxidase	3awuA00

1NOLA 4Z0ZA 4D87A 3AWTA 1WX5A 3NPYA 1HCYA 4J6UA 1HC1A 3AWWA 3AWVA 1BT3A 4J6TA 4HD6A 1LL1A 1JS8A 2ZWDA 2ZWEA 4YZWA 3AWYA 4J3PA 3W6WA 5I3BA 1LLAA 4P6RA 2ZMZA 5CE9A 2ZMYA 2ZWGA 4J6VA 3WJMB 1BT1A 4HD4A 4J3QA 4Z10A 1WXCA 1OXYA 2AHKA 3HHSA 3NM8A 1BT2A 1BUGA 3NQ5A 1WX4A 4OUAA 3NQ0A 3AWXA 4L37A 5I3AA 2ZWFA 3QJOA 2P3XA 3W6QA 4P6SA 3WKYA 3AX0A 3HHSB 3AWUA 2AHLA 4HD7A 1LNLA 2Y9WA 4OUAB 2Y9XA 3WJMA 4L37B 1WX2A 3NTMA 3AWSA 4J3RA 5I38A 4Z0YA 3GWJA 3NQ1A 4P6TA 2ZMXA 3AWZA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1NOL A;  4Z0Z A;  4D87 A;  3AWT A;  1WX5 A;  3NPY A;  1HCY A;  4J6U A;  1HC1 A;  3AWW A;  3AWV A;  1BT3 A;  4J6T A;  4HD6 A;  1LL1 A;  1JS8 A;  2ZWD A;  2ZWE A;  4YZW A;  3AWY A;  4J3P A;  3W6W A;  5I3B A;  1LLA A;  4P6R A;  2ZMZ A;  5CE9 A;  2ZMY A;  2ZWG A;  4J6V A;  3WJM B;  1BT1 A;  4HD4 A;  4J3Q A;  4Z10 A;  1WXC A;  1OXY A;  2AHK A;  3HHS A;  3NM8 A;  1BT2 A;  1BUG A;  3NQ5 A;  1WX4 A;  4OUA A;  3NQ0 A;  3AWX A;  4L37 A;  5I3A A;  2ZWF A;  3QJO A;  2P3X A;  3W6Q A;  4P6S A;  3WKY A;  3AX0 A;  3HHS B;  3AWU A;  2AHL A;  4HD7 A;  1LNL A;  2Y9W A;  4OUA B;  2Y9X A;  3WJM A;  4L37 B;  1WX2 A;  3NTM A;  3AWS A;  4J3R A;  5I38 A;  4Z0Y A;  3GWJ A;  3NQ1 A;  4P6T A;  2ZMX A;  3AWZ A; 
#chains in the Genus database with same CATH topology
 1NOL A;  4Z0Z A;  4D87 A;  3AWT A;  1WX5 A;  3NPY A;  1HCY A;  4J6U A;  1HC1 A;  3AWW A;  3AWV A;  1BT3 A;  4J6T A;  4HD6 A;  1LL1 A;  1JS8 A;  2ZWD A;  2ZWE A;  4YZW A;  3AWY A;  4J3P A;  3W6W A;  5I3B A;  1LLA A;  4P6R A;  2ZMZ A;  5CE9 A;  2ZMY A;  2ZWG A;  4J6V A;  3WJM B;  1BT1 A;  4HD4 A;  4J3Q A;  4Z10 A;  1WXC A;  1OXY A;  2AHK A;  3HHS A;  3NM8 A;  1BT2 A;  1BUG A;  3NQ5 A;  1WX4 A;  4OUA A;  3NQ0 A;  3AWX A;  4L37 A;  5I3A A;  2ZWF A;  3QJO A;  2P3X A;  3W6Q A;  4P6S A;  3WKY A;  3AX0 A;  3HHS B;  3AWU A;  2AHL A;  4HD7 A;  1LNL A;  2Y9W A;  4OUA B;  2Y9X A;  3WJM A;  4L37 B;  1WX2 A;  3NTM A;  3AWS A;  4J3R A;  5I38 A;  4Z0Y A;  3GWJ A;  3NQ1 A;  4P6T A;  2ZMX A;  3AWZ A; 
#chains in the Genus database with same CATH homology
 1NOL A;  4Z0Z A;  4D87 A;  3AWT A;  1WX5 A;  3NPY A;  1HCY A;  4J6U A;  1HC1 A;  3AWW A;  3AWV A;  1BT3 A;  4J6T A;  4HD6 A;  1LL1 A;  1JS8 A;  2ZWD A;  2ZWE A;  4YZW A;  3AWY A;  4J3P A;  3W6W A;  5I3B A;  1LLA A;  4P6R A;  2ZMZ A;  5CE9 A;  2ZMY A;  2ZWG A;  4J6V A;  3WJM B;  1BT1 A;  4HD4 A;  4J3Q A;  4Z10 A;  1WXC A;  1OXY A;  2AHK A;  3HHS A;  3NM8 A;  1BT2 A;  1BUG A;  3NQ5 A;  1WX4 A;  4OUA A;  3NQ0 A;  3AWX A;  4L37 A;  5I3A A;  2ZWF A;  3QJO A;  2P3X A;  3W6Q A;  4P6S A;  3WKY A;  3AX0 A;  3HHS B;  3AWU A;  2AHL A;  4HD7 A;  1LNL A;  2Y9W A;  4OUA B;  2Y9X A;  3WJM A;  4L37 B;  1WX2 A;  3NTM A;  3AWS A;  4J3R A;  5I38 A;  4Z0Y A;  3GWJ A;  3NQ1 A;  4P6T A;  2ZMX A;  3AWZ A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3AWUA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations