3BPQ | Genus

Total Genus 22

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	22
sequence length	86
structure length	85
Chain Sequence	VLFAKTFVKDLKHVPGHIRKRIKLIIEECQNSNSLNLKLDIKKIKGYHNYYRIRVGNYSIGIEVNGDTIIFRRVLHRKSIYDYFP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal structure of the antitoxin-toxin protein complex RelB-RelE from Methanococcus jannaschii pubmed doi rcsb
molecule keywords	Antitoxin RelB3
molecule tags	Toxin
source organism	Methanocaldococcus jannaschii
total genus	22
structure length	85
sequence length	86
chains with identical sequence	D
ec nomenclature	ec 3.1.-.-:
pdb deposition date	2007-12-19

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF05016	ParE_toxin	ParE toxin of type II toxin-antitoxin system, parDE

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.2310.20	Alpha Beta	2-Layer Sandwich	YaeB-like fold	RelE-like	3bpqB00

4MCTB 5CEGB 4FXED 4LTTA 2A6QE 5CW7B 4LSYA 2OTRA 4ML0B 4YY3Y 5IWHA 4MMGA 4MMJA 1Z8MA 4FXHA 4Q2UB 3KXEA 2A6RA 4MCXB 3BPQB 4PX8A 1WMIA 5IXLA 3OEIC 2KC8A 2A6SA 2KC9A 4ML2A 4FXIA 3G5OB 5CZFC 4NRNA 4LS4A 5CZEB 2KHEA
chains in the Genus database with same CATH superfamily

3AO9A 4MCTB 5CEGB 4FXED 4LTTA 2FHZB 2A6QE 1XQBA 5CW7B 3HI2B 4LSYA 2OTRA 2A8KA 4ML0B 2PD0A 4YY3Y 4FBDA 5IWHA 4MMGA 4MMJA 1Z8MA 4FXHA 4Q2UB 2DFXE 3KXEA 2A6RA 4MCXB 3BPQB 4PX8A 1WMIA 5IXLA 3OEIC 2KC8A 2DJHA 2A6SA 2KC9A 4ML2A 4FXIA 3G5OB 5CZFC 4NRNA 4LS4A 5CZEB 3VJ7A 2KHEA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4MCT B;  5CEG B;  4FXE D;  4LTT A;  2A6Q E;  5CW7 B;  4LSY A;  2OTR A;  4ML0 B;  4YY3 Y;  5IWH A;  4MMG A;  4MMJ A;  1Z8M A;  4FXH A;  4Q2U B;  3KXE A;  2A6R A;  4MCX B;  3BPQ B;  4PX8 A;  1WMI A;  5IXL A;  3OEI C;  2KC8 A;  2A6S A;  2KC9 A;  4ML2 A;  4FXI A;  3G5O B;  5CZF C;  4NRN A;  4LS4 A;  5CZE B;  2KHE A; 
#chains in the Genus database with same CATH topology
 3AO9 A;  4MCT B;  5CEG B;  4FXE D;  4LTT A;  2FHZ B;  2A6Q E;  1XQB A;  5CW7 B;  3HI2 B;  4LSY A;  2OTR A;  2A8K A;  4ML0 B;  2PD0 A;  4YY3 Y;  4FBD A;  5IWH A;  4MMG A;  4MMJ A;  1Z8M A;  4FXH A;  4Q2U B;  2DFX E;  3KXE A;  2A6R A;  4MCX B;  3BPQ B;  4PX8 A;  1WMI A;  5IXL A;  3OEI C;  2KC8 A;  2DJH A;  2A6S A;  2KC9 A;  4ML2 A;  4FXI A;  3G5O B;  5CZF C;  4NRN A;  4LS4 A;  5CZE B;  3VJ7 A;  2KHE A; 
#chains in the Genus database with same CATH homology
 4MCT B;  5CEG B;  4FXE D;  4LTT A;  2A6Q E;  5CW7 B;  4LSY A;  2OTR A;  4ML0 B;  4YY3 Y;  5IWH A;  4MMG A;  4MMJ A;  1Z8M A;  4FXH A;  4Q2U B;  3KXE A;  2A6R A;  4MCX B;  3BPQ B;  4PX8 A;  1WMI A;  5IXL A;  3OEI C;  2KC8 A;  2A6S A;  2KC9 A;  4ML2 A;  4FXI A;  3G5O B;  5CZF C;  4NRN A;  4LS4 A;  5CZE B;  2KHE A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3BPQB

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations