3CCSU

Structure of anisomycin resistant 50s ribosomal subunit: 23s rrna mutation g2482a
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
53
structure length
53
Chain Sequence
RECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Mutations outside the anisomycin-binding site can make ribosomes drug-resistant.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 50S ribosomal protein L2P
total genus 6
structure length 53
sequence length 53
ec nomenclature
pdb deposition date 2008-02-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
U PF01246 Ribosomal_L24e Ribosomal protein L24e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.170.20 Mainly Beta Roll Ribosomal Protein L24e; Chain: T; Ribosomal Protein L24e; Chain: T; 3ccsU00
3CCMU 1Q82V 1K8AV 2OTJU 1M90V 3CMAU 3CD6U 3CCLU 1VQ5U 1VQ9U 1N8RV 3CC4U 3I55U 3G71U 1KD1V 1VQ4U 1KC8V 2QEXU 1K9MV 3G4SU 1Q7YV 1M1KV 1VQ7U 3CCUU 1Q81V 1VQMU 3CMEU 1VQ6U 1YHQU 1YJNU 1S72U 1VQ8U 1Q86V 1K73V 1YI2U 1VQLU 1YJWU 1NJIV 3CC7U 3CCVU 2QA4U 2OTLU 1YIJU 1JJ2T 3G6EU 3CC2U 3CXCT 5AN9G 3CPWT 1VQPU 1VQNU 3CCEU 1YITU 1W2BT 3I56U 3CCRU 1KQST 1VQKU 3CCQU 3CCSU 1QVGT 1QVFT 1VQOU 3OW2T 1YJ9U 3CCJU
chains in the Genus database with same CATH superfamily
2OTJU 3CD6U 1N8RV 1KC8V 1VQ8U 1NJIV 3CCVU 4UY8X 3G6EU 2JZ6A 3CPWT 3CCEU 1W2BT 1VQKU 1QVGT 3J7ZX 3CCJU 1K8AV 1M90V 3CMAU 1VQ5U 1VQ9U 3I55U 1VQ4U 2QEXU 1Q81V 1S72U 1K73V 3ANYA 5MLCY 3ABQA 1YITU 1QVFT 3I56U 3CCRU 1YJ9U 3CCMU 3ABRA 3CCLU 3G71U 1KD1V 1K9MV 3G4SU 1Q7YV 3ABSA 1M1KV 3ABOA 3CCUU 1VQMU 3CMEU 1VQ6U 1YHQU 1YJNU 1VQLU 3CC7U 2OTLU 1YIJU 1JJ2T 1JJDA 3CXCT 1KQST 3CCQU 3OW2T 1VQPU 1Q82V 3CC4U 3AO0A 5DM6U 1VQ7U 5H1SY 1Q86V 1YI2U 1YJWU 2QA4U 2QEZA 5AN9G 1VQNU 3CCSU 1VQOU 3CC2U
chains in the Genus database with same CATH topology
3CCMU 1Q82V 1K8AV 2OTJU 1M90V 3CMAU 3CD6U 3CCLU 1VQ5U 1VQ9U 1N8RV 3CC4U 3I55U 3G71U 1KD1V 1VQ4U 1KC8V 2QEXU 1K9MV 3G4SU 1Q7YV 1M1KV 1VQ7U 3CCUU 1Q81V 1VQMU 3CMEU 1VQ6U 1YHQU 1YJNU 1S72U 1VQ8U 1Q86V 1K73V 1YI2U 1VQLU 1YJWU 1NJIV 3CC7U 3CCVU 2QA4U 2OTLU 1YIJU 1JJ2T 3G6EU 3CC2U 1JJDA 3CXCT 5AN9G 3CPWT 1VQPU 1VQNU 3CCEU 1YITU 1W2BT 3I56U 3CCRU 1KQST 1VQKU 3CCQU 3CCSU 1QVGT 1QVFT 1VQOU 3OW2T 1YJ9U 3CCJU
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CCM U;  1Q82 V;  1K8A V;  2OTJ U;  1M90 V;  3CMA U;  3CD6 U;  3CCL U;  1VQ5 U;  1VQ9 U;  1N8R V;  3CC4 U;  3I55 U;  3G71 U;  1KD1 V;  1VQ4 U;  1KC8 V;  2QEX U;  1K9M V;  3G4S U;  1Q7Y V;  1M1K V;  1VQ7 U;  3CCU U;  1Q81 V;  1VQM U;  3CME U;  1VQ6 U;  1YHQ U;  1YJN U;  1S72 U;  1VQ8 U;  1Q86 V;  1K73 V;  1YI2 U;  1VQL U;  1YJW U;  1NJI V;  3CC7 U;  3CCV U;  2QA4 U;  2OTL U;  1YIJ U;  1JJ2 T;  3G6E U;  3CC2 U;  3CXC T;  5AN9 G;  3CPW T;  1VQP U;  1VQN U;  3CCE U;  1YIT U;  1W2B T;  3I56 U;  3CCR U;  1KQS T;  1VQK U;  3CCQ U;  3CCS U;  1QVG T;  1QVF T;  1VQO U;  3OW2 T;  1YJ9 U;  3CCJ U; 
#chains in the Genus database with same CATH topology
 2OTJ U;  3CD6 U;  1N8R V;  1KC8 V;  1VQ8 U;  1NJI V;  3CCV U;  4UY8 X;  3G6E U;  2JZ6 A;  3CPW T;  3CCE U;  1W2B T;  1VQK U;  1QVG T;  3J7Z X;  3CCJ U;  1K8A V;  1M90 V;  3CMA U;  1VQ5 U;  1VQ9 U;  3I55 U;  1VQ4 U;  2QEX U;  1Q81 V;  1S72 U;  1K73 V;  3ANY A;  5MLC Y;  3ABQ A;  1YIT U;  1QVF T;  3I56 U;  3CCR U;  1YJ9 U;  3CCM U;  3ABR A;  3CCL U;  3G71 U;  1KD1 V;  1K9M V;  3G4S U;  1Q7Y V;  3ABS A;  1M1K V;  3ABO A;  3CCU U;  1VQM U;  3CME U;  1VQ6 U;  1YHQ U;  1YJN U;  1VQL U;  3CC7 U;  2OTL U;  1YIJ U;  1JJ2 T;  1JJD A;  3CXC T;  1KQS T;  3CCQ U;  3OW2 T;  1VQP U;  1Q82 V;  3CC4 U;  3AO0 A;  5DM6 U;  1VQ7 U;  5H1S Y;  1Q86 V;  1YI2 U;  1YJW U;  2QA4 U;  2QEZ A;  5AN9 G;  1VQN U;  3CCS U;  1VQO U;  3CC2 U; 
#chains in the Genus database with same CATH homology
 3CCM U;  1Q82 V;  1K8A V;  2OTJ U;  1M90 V;  3CMA U;  3CD6 U;  3CCL U;  1VQ5 U;  1VQ9 U;  1N8R V;  3CC4 U;  3I55 U;  3G71 U;  1KD1 V;  1VQ4 U;  1KC8 V;  2QEX U;  1K9M V;  3G4S U;  1Q7Y V;  1M1K V;  1VQ7 U;  3CCU U;  1Q81 V;  1VQM U;  3CME U;  1VQ6 U;  1YHQ U;  1YJN U;  1S72 U;  1VQ8 U;  1Q86 V;  1K73 V;  1YI2 U;  1VQL U;  1YJW U;  1NJI V;  3CC7 U;  3CCV U;  2QA4 U;  2OTL U;  1YIJ U;  1JJ2 T;  3G6E U;  3CC2 U;  1JJD A;  3CXC T;  5AN9 G;  3CPW T;  1VQP U;  1VQN U;  3CCE U;  1YIT U;  1W2B T;  3I56 U;  3CCR U;  1KQS T;  1VQK U;  3CCQ U;  3CCS U;  1QVG T;  1QVF T;  1VQO U;  3OW2 T;  1YJ9 U;  3CCJ U; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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