3HQB | Genus

Total Genus 22

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	22
sequence length	63
structure length	63
Chain Sequence	MLQKKIEEIAAKYKHSVVKKCCYDGACVNNDETCEQRAARISLGPRCIKAFTECCVVASQLRA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 63 atoms

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63 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Immune system
source organism	Homo sapiens
publication title	Structure of human desArg-C5a. pubmed doi rcsb
molecule keywords	Complement C5
total genus	22
structure length	63
sequence length	63
chains with identical sequence	B
ec nomenclature
pdb deposition date	2009-06-05

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01821	ANATO	Anaphylotoxin-like domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.91.20	Mainly Alpha	Up-down Bundle	Influenza Virus Matrix Protein; Chain A, domain 1	Anaphylotoxins (complement system)	3hqbA00

3CU7A 5B4PB 3HQBA 3HQAA 4P3AA 1C5AA 5JPNB 4HW5A 4P39A 4FXKB 2A73B 4HWJA 4I6OA 2B39A 1CFAA 4WB3A 4WB2A 4P3BA 1KJSA 3KLSA 4UU9C
chains in the Genus database with same CATH superfamily

3CU7A 4IQ4A 4FXGB 5B4PB 5CQEA 3HQBA 1AA7A 3HQAA 4D9JA 4P3AA 1C5AA 5JPNB 4HW5A 3VDXA 4P39A 4ITVA 2Z16A 4FXKB 3MD2A 2A73B 4HWJA 4I6OA 2B39A 1CFAA 5JPMB 4WB3A 4PUSA 4WB2A 1EA3A 4P3BA 1KJSA 3KLSA 4UU9C
chains in the Genus database with same CATH topology

3CU7A 5B4PB 3HQBA 3HQAA 4P3AA 1C5AA 5JPNB 4HW5A 4P39A 4FXKB 2A73B 4HWJA 4I6OA 2B39A 1CFAA 4WB3A 4WB2A 4P3BA 1KJSA 3KLSA 4UU9C
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3CU7 A;  5B4P B;  3HQB A;  3HQA A;  4P3A A;  1C5A A;  5JPN B;  4HW5 A;  4P39 A;  4FXK B;  2A73 B;  4HWJ A;  4I6O A;  2B39 A;  1CFA A;  4WB3 A;  4WB2 A;  4P3B A;  1KJS A;  3KLS A;  4UU9 C; 
#chains in the Genus database with same CATH topology
 3CU7 A;  4IQ4 A;  4FXG B;  5B4P B;  5CQE A;  3HQB A;  1AA7 A;  3HQA A;  4D9J A;  4P3A A;  1C5A A;  5JPN B;  4HW5 A;  3VDX A;  4P39 A;  4ITV A;  2Z16 A;  4FXK B;  3MD2 A;  2A73 B;  4HWJ A;  4I6O A;  2B39 A;  1CFA A;  5JPM B;  4WB3 A;  4PUS A;  4WB2 A;  1EA3 A;  4P3B A;  1KJS A;  3KLS A;  4UU9 C; 
#chains in the Genus database with same CATH homology
 3CU7 A;  5B4P B;  3HQB A;  3HQA A;  4P3A A;  1C5A A;  5JPN B;  4HW5 A;  4P39 A;  4FXK B;  2A73 B;  4HWJ A;  4I6O A;  2B39 A;  1CFA A;  4WB3 A;  4WB2 A;  4P3B A;  1KJS A;  3KLS A;  4UU9 C;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3HQBA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations