3L0WA

Structure of split monoubiquitinated pcna with ubiquitin in position two
Total Genus 30

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
163
structure length
163
Chain Sequence
MLEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDSINIMIT

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (2-5)TVIII2 (57-60)AH1 (9-19)AH2 (72-80)TIV1 (20-23)TII1 (19-22)EMPTYS2 (25-31)TI1 (31-34)S5 (59-62)S3 (34-40)3H1 (54-56)S4 (47-53)TIV2 (83-86)S9 (111-117)S8 (98-104)TIV3 (96-99)TIV4 (106-109)TVIII4 (130-133)AH3 (141-152)TI3 (152-155)TVIII5 (155-158)S7 (89-92)TVIII1 (6-9)S6 (66-71)TI2 (41-44)Updating...
connected with : NaN
molecule tags Replication
source organism Saccharomyces cerevisiae
publication title Structure of monoubiquitinated PCNA and implications for translesion synthesis and DNA polymerase exchange.
pubmed doi rcsb
molecule keywords Proliferating cell nuclear antigen
total genus 30
structure length 163
sequence length 163
ec nomenclature
pdb deposition date 2009-12-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.150.10 Alpha Beta Roll DNA Polymerase III; Chain A, domain 2 DNA Polymerase III, subunit A, domain 2 3l0wA00
4PNUA 2AVTA 4K3LA 1OK7A 4MJPA 3T0PA 4K3RA 4N96A 5AGVA 2POLA 4K3PA 5AH4A 4MJQA 4OVHA 3Q4KA 3P16A 4K74A 4N99A 4OVGA 1VPKA 4TSZA 4K3MA 4TR6A 3F1VA 4K3QA 3L0WA 3D1FA 2XURA 4TR7A 3L10A 3RB9A 4N95A 3BEPA 4N98A 3QSBB 4PNVA 4N97A 4TRTA 3PGEB 4N94A 1JQLA 2AWAA 3Q4LA 1MMIA 5FRQA 3L0XA 1UNNA 3D1EA 4K3KA 4RKIA 5AGUA 4MJRA 5AH2A 4OVFA 4TR8A 5FVEA 3Q4JA 4K3OA 3PWEA 3D1GA 4N9AA 4PNWA 4K3SA 1JQJA 3QSBA 4S3IA
chains in the Genus database with same CATH superfamily
4PNUA 2AVTA 3PGEA 1OK7A 4K3LA 4MJPA 3T0PA 4K3RA 3L0XB 4N96A 5AGVA 2POLA 4K3PA 5AH4A 4MJQA 4OVHA 3Q4KA 3P16A 4K74A 4N99A 4OVGA 1VPKA 4TSZA 4K3MA 4TR6A 3F1VA 4K3QA 3L0WA 3D1FA 2XURA 4TR7A 3L10A 3RB9A 4N95A 3BEPA 4N98A 3QSBB 4PNVA 4N97A 4TRTA 3PGEB 4N94A 1JQLA 2AWAA 3Q4LA 1MMIA 5FRQA 3L0XA 1UNNA 3D1EA 4K3KA 4RKIA 3L0WB 5AGUA 4MJRA 5AH2A 4OVFA 3L10B 4TR8A 5FVEA 3Q4JA 4K3OA 3PWEA 3D1GA 4N9AA 4PNWA 4K3SA 1JQJA 3QSBA 4S3IA
chains in the Genus database with same CATH topology
4PNUA 2AVTA 4K3LA 1OK7A 4MJPA 3T0PA 4K3RA 4N96A 5AGVA 2POLA 4K3PA 5AH4A 4MJQA 4OVHA 3Q4KA 3P16A 4K74A 4N99A 4OVGA 1VPKA 4TSZA 4K3MA 4TR6A 3F1VA 4K3QA 3L0WA 3D1FA 2XURA 4TR7A 3L10A 3RB9A 4N95A 3BEPA 4N98A 3QSBB 4PNVA 4N97A 4TRTA 3PGEB 4N94A 1JQLA 2AWAA 3Q4LA 1MMIA 5FRQA 3L0XA 1UNNA 3D1EA 4K3KA 4RKIA 5AGUA 4MJRA 5AH2A 4OVFA 4TR8A 5FVEA 3Q4JA 4K3OA 3PWEA 3D1GA 4N9AA 4PNWA 4K3SA 1JQJA 3QSBA 4S3IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PNU A;  2AVT A;  4K3L A;  1OK7 A;  4MJP A;  3T0P A;  4K3R A;  4N96 A;  5AGV A;  2POL A;  4K3P A;  5AH4 A;  4MJQ A;  4OVH A;  3Q4K A;  3P16 A;  4K74 A;  4N99 A;  4OVG A;  1VPK A;  4TSZ A;  4K3M A;  4TR6 A;  3F1V A;  4K3Q A;  3L0W A;  3D1F A;  2XUR A;  4TR7 A;  3L10 A;  3RB9 A;  4N95 A;  3BEP A;  4N98 A;  3QSB B;  4PNV A;  4N97 A;  4TRT A;  3PGE B;  4N94 A;  1JQL A;  2AWA A;  3Q4L A;  1MMI A;  5FRQ A;  3L0X A;  1UNN A;  3D1E A;  4K3K A;  4RKI A;  5AGU A;  4MJR A;  5AH2 A;  4OVF A;  4TR8 A;  5FVE A;  3Q4J A;  4K3O A;  3PWE A;  3D1G A;  4N9A A;  4PNW A;  4K3S A;  1JQJ A;  3QSB A;  4S3I A; 
#chains in the Genus database with same CATH topology
 4PNU A;  2AVT A;  3PGE A;  1OK7 A;  4K3L A;  4MJP A;  3T0P A;  4K3R A;  3L0X B;  4N96 A;  5AGV A;  2POL A;  4K3P A;  5AH4 A;  4MJQ A;  4OVH A;  3Q4K A;  3P16 A;  4K74 A;  4N99 A;  4OVG A;  1VPK A;  4TSZ A;  4K3M A;  4TR6 A;  3F1V A;  4K3Q A;  3L0W A;  3D1F A;  2XUR A;  4TR7 A;  3L10 A;  3RB9 A;  4N95 A;  3BEP A;  4N98 A;  3QSB B;  4PNV A;  4N97 A;  4TRT A;  3PGE B;  4N94 A;  1JQL A;  2AWA A;  3Q4L A;  1MMI A;  5FRQ A;  3L0X A;  1UNN A;  3D1E A;  4K3K A;  4RKI A;  3L0W B;  5AGU A;  4MJR A;  5AH2 A;  4OVF A;  3L10 B;  4TR8 A;  5FVE A;  3Q4J A;  4K3O A;  3PWE A;  3D1G A;  4N9A A;  4PNW A;  4K3S A;  1JQJ A;  3QSB A;  4S3I A; 
#chains in the Genus database with same CATH homology
 4PNU A;  2AVT A;  4K3L A;  1OK7 A;  4MJP A;  3T0P A;  4K3R A;  4N96 A;  5AGV A;  2POL A;  4K3P A;  5AH4 A;  4MJQ A;  4OVH A;  3Q4K A;  3P16 A;  4K74 A;  4N99 A;  4OVG A;  1VPK A;  4TSZ A;  4K3M A;  4TR6 A;  3F1V A;  4K3Q A;  3L0W A;  3D1F A;  2XUR A;  4TR7 A;  3L10 A;  3RB9 A;  4N95 A;  3BEP A;  4N98 A;  3QSB B;  4PNV A;  4N97 A;  4TRT A;  3PGE B;  4N94 A;  1JQL A;  2AWA A;  3Q4L A;  1MMI A;  5FRQ A;  3L0X A;  1UNN A;  3D1E A;  4K3K A;  4RKI A;  5AGU A;  4MJR A;  5AH2 A;  4OVF A;  4TR8 A;  5FVE A;  3Q4J A;  4K3O A;  3PWE A;  3D1G A;  4N9A A;  4PNW A;  4K3S A;  1JQJ A;  3QSB A;  4S3I A; 
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