3L10A

Structure of split monoubiquitinated pcna with ubiquitin in position one
Total Genus 30

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
163
structure length
163
Chain Sequence
MLEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDSINIMIT

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
S1 (2-5)TVIII2 (57-60)AH1 (9-19)AH2 (72-80)TIV1 (20-23)TII1 (19-22)EMPTYS2 (25-31)TI1 (31-34)S5 (59-62)S3 (34-40)3H1 (54-56)S4 (47-53)S6 (66-71)TIV2 (83-86)S9 (111-117)S8 (98-104)TIV3 (96-99)TVIII4 (130-133)AH3 (141-152)TI3 (152-155)TVIII5 (155-158)S7 (89-92)TVIII1 (6-9)TI2 (41-44)TIV4 (106-109)Updating...
connected with : NaN
molecule tags Replication
source organism Saccharomyces cerevisiae
publication title Structure of monoubiquitinated PCNA and implications for translesion synthesis and DNA polymerase exchange.
pubmed doi rcsb
molecule keywords Proliferating cell nuclear antigen
total genus 30
structure length 163
sequence length 163
ec nomenclature
pdb deposition date 2009-12-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.150.10 Alpha Beta Roll DNA Polymerase III; Chain A, domain 2 DNA Polymerase III, subunit A, domain 2 3l10A00
4K3LA 2XURA 3PGEB 4K3SA 4K3OA 4K74A 4N95A 5AH4A 4MJQA 4TR6A 4N99A 4OVFA 3QSBB 4RKIA 5AGUA 4OVGA 3L0WA 4MJPA 4PNVA 3T0PA 1MMIA 4K3KA 4MJRA 4PNWA 3Q4JA 1JQJA 1UNNA 4TR8A 3D1FA 4PNUA 4TRTA 4OVHA 1JQLA 4N96A 4N9AA 4S3IA 2AVTA 2AWAA 3D1EA 4K3PA 4N98A 4TSZA 4K3RA 3BEPA 5FRQA 3D1GA 2POLA 4N97A 4K3MA 1OK7A 3F1VA 3L10A 4TR7A 5AH2A 5AGVA 3P16A 4N94A 4K3QA 3PWEA 5FVEA 3QSBA 1VPKA 3L0XA 3Q4KA 3Q4LA 3RB9A
chains in the Genus database with same CATH superfamily
4K3LA 2XURA 3PGEB 4K3SA 3L10B 4K3OA 4K74A 4N95A 5AH4A 4MJQA 4TR6A 4N99A 4OVFA 3QSBB 4RKIA 3L0XB 5AGUA 4OVGA 3L0WA 4MJPA 4PNVA 3T0PA 1MMIA 4K3KA 4MJRA 4PNWA 3Q4JA 1JQJA 1UNNA 4TR8A 3D1FA 4PNUA 4TRTA 4OVHA 1JQLA 4N96A 4N9AA 4S3IA 2AVTA 2AWAA 3D1EA 3L0WB 4K3PA 4N98A 4K3RA 4TSZA 3BEPA 5FRQA 3D1GA 2POLA 3PGEA 4K3MA 1OK7A 3F1VA 3L10A 4N97A 4TR7A 5AH2A 5AGVA 3P16A 4N94A 4K3QA 3PWEA 5FVEA 3QSBA 1VPKA 3L0XA 3Q4KA 3Q4LA 3RB9A
chains in the Genus database with same CATH topology
4K3LA 2XURA 3PGEB 4K3SA 4K3OA 4K74A 4N95A 5AH4A 4MJQA 4TR6A 4N99A 4OVFA 3QSBB 4RKIA 5AGUA 4OVGA 3L0WA 4MJPA 4PNVA 3T0PA 1MMIA 4K3KA 4MJRA 4PNWA 3Q4JA 1JQJA 1UNNA 4TR8A 3D1FA 4PNUA 4TRTA 4OVHA 1JQLA 4N96A 4N9AA 4S3IA 2AVTA 2AWAA 3D1EA 4K3PA 4N98A 4TSZA 4K3RA 3BEPA 5FRQA 3D1GA 2POLA 4N97A 4K3MA 1OK7A 3F1VA 3L10A 4TR7A 5AH2A 5AGVA 3P16A 4N94A 4K3QA 3PWEA 5FVEA 3QSBA 1VPKA 3L0XA 3Q4KA 3Q4LA 3RB9A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 4K3L A;  2XUR A;  3PGE B;  4K3S A;  4K3O A;  4K74 A;  4N95 A;  5AH4 A;  4MJQ A;  4TR6 A;  4N99 A;  4OVF A;  3QSB B;  4RKI A;  5AGU A;  4OVG A;  3L0W A;  4MJP A;  4PNV A;  3T0P A;  1MMI A;  4K3K A;  4MJR A;  4PNW A;  3Q4J A;  1JQJ A;  1UNN A;  4TR8 A;  3D1F A;  4PNU A;  4TRT A;  4OVH A;  1JQL A;  4N96 A;  4N9A A;  4S3I A;  2AVT A;  2AWA A;  3D1E A;  4K3P A;  4N98 A;  4TSZ A;  4K3R A;  3BEP A;  5FRQ A;  3D1G A;  2POL A;  4N97 A;  4K3M A;  1OK7 A;  3F1V A;  3L10 A;  4TR7 A;  5AH2 A;  5AGV A;  3P16 A;  4N94 A;  4K3Q A;  3PWE A;  5FVE A;  3QSB A;  1VPK A;  3L0X A;  3Q4K A;  3Q4L A;  3RB9 A; 
#chains in the Genus database with same CATH topology
 4K3L A;  2XUR A;  3PGE B;  4K3S A;  3L10 B;  4K3O A;  4K74 A;  4N95 A;  5AH4 A;  4MJQ A;  4TR6 A;  4N99 A;  4OVF A;  3QSB B;  4RKI A;  3L0X B;  5AGU A;  4OVG A;  3L0W A;  4MJP A;  4PNV A;  3T0P A;  1MMI A;  4K3K A;  4MJR A;  4PNW A;  3Q4J A;  1JQJ A;  1UNN A;  4TR8 A;  3D1F A;  4PNU A;  4TRT A;  4OVH A;  1JQL A;  4N96 A;  4N9A A;  4S3I A;  2AVT A;  2AWA A;  3D1E A;  3L0W B;  4K3P A;  4N98 A;  4K3R A;  4TSZ A;  3BEP A;  5FRQ A;  3D1G A;  2POL A;  3PGE A;  4K3M A;  1OK7 A;  3F1V A;  3L10 A;  4N97 A;  4TR7 A;  5AH2 A;  5AGV A;  3P16 A;  4N94 A;  4K3Q A;  3PWE A;  5FVE A;  3QSB A;  1VPK A;  3L0X A;  3Q4K A;  3Q4L A;  3RB9 A; 
#chains in the Genus database with same CATH homology
 4K3L A;  2XUR A;  3PGE B;  4K3S A;  4K3O A;  4K74 A;  4N95 A;  5AH4 A;  4MJQ A;  4TR6 A;  4N99 A;  4OVF A;  3QSB B;  4RKI A;  5AGU A;  4OVG A;  3L0W A;  4MJP A;  4PNV A;  3T0P A;  1MMI A;  4K3K A;  4MJR A;  4PNW A;  3Q4J A;  1JQJ A;  1UNN A;  4TR8 A;  3D1F A;  4PNU A;  4TRT A;  4OVH A;  1JQL A;  4N96 A;  4N9A A;  4S3I A;  2AVT A;  2AWA A;  3D1E A;  4K3P A;  4N98 A;  4TSZ A;  4K3R A;  3BEP A;  5FRQ A;  3D1G A;  2POL A;  4N97 A;  4K3M A;  1OK7 A;  3F1V A;  3L10 A;  4TR7 A;  5AH2 A;  5AGV A;  3P16 A;  4N94 A;  4K3Q A;  3PWE A;  5FVE A;  3QSB A;  1VPK A;  3L0X A;  3Q4K A;  3Q4L A;  3RB9 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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