3O8J | Genus

Total Genus 135

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	135
sequence length	364
structure length	364
Chain Sequence	PAGNTALCTVGKSGNDLHYRGYDILDLAEHCEFEEVAHLLIHGKLPTRDELNAYKSKLKALRGLPANVRTVLEALPAASHPMDVMRTGVSALGCTLPEKEGHTVSGARDIADKLLASLSSILLYWYHYSHNGERIQPETDDDSIGGHFLHLLHGEKPTQSWEKAMHISLVLYAEHEFNASTFTSRVIAGTGSDVYSAIIGAIGALRGPKHGGANEVSLEIQQRYETPDEAEADIRKRVENKEVVIGFGHPVYTIADPRHQVIKRVAKQLSEEGGSLKMYHIADRLETVMWETKKMFPNLDWFSAVSYNMMGVPTEMFTPLFVIARVTGWAAHIIEQRQDNKIIRPSANYTGPEDRPFVSIDDRC

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Salmonella enterica
publication title	Crystal structure of Salmonella typhimurium 2-methylcitrate synthase: Insights on domain movement and substrate specificity pubmed doi rcsb
molecule keywords	2-methylcitrate synthase
total genus	135
structure length	364
sequence length	364
chains with identical sequence	B, C, D, E, F, G, H, I, J
ec nomenclature	ec 2.3.3.16: Citrate synthase (unknown stereospecificity).
pdb deposition date	2010-08-03

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00285	Citrate_synt	Citrate synthase, C-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.230.10	Mainly Alpha	Orthogonal Bundle	Cytochrome p450-Terp; domain 2	Cytochrome P450-Terp, domain 2	3o8jA02
1.10.580.10	Mainly Alpha	Orthogonal Bundle	Citrate Synthase; domain 1	Citrate Synthase, domain 1	3o8jA01

1NXEA 4CSCA 4E6YA 6CTSA 1CSIA 4JAEA 2P2WA 1CSHA 3TQGA 6CSCA 1IOMA 4CTSA 1AJ8A 3MSUA 5CSCB 3O8JA 1VGPA 1NXGA 1O7XA 1IXEA 1AL6A 2C6XA 1CTSA 1AMZA 4TVMA 2R9EA 4JAFA 1A59A 4YBOA 1CSRA 3HWKA 2R26A 2H12A 4G6BA 4JADA 2IBPA 1OWBA 1CSCA 3CSCA 1CSSA 4XGHA 1OWCA 3ENJA 5CTSA 4JAGA 5CSCA 2IFCA 2CSCA 1VGMA 2CTSA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1NXE A;  4CSC A;  4E6Y A;  6CTS A;  1CSI A;  4JAE A;  2P2W A;  1CSH A;  3TQG A;  6CSC A;  1IOM A;  4CTS A;  1AJ8 A;  3MSU A;  5CSC B;  3O8J A;  1VGP A;  1NXG A;  1O7X A;  1IXE A;  1AL6 A;  2C6X A;  1CTS A;  1AMZ A;  4TVM A;  2R9E A;  4JAF A;  1A59 A;  4YBO A;  1CSR A;  3HWK A;  2R26 A;  2H12 A;  4G6B A;  4JAD A;  2IBP A;  1OWB A;  1CSC A;  3CSC A;  1CSS A;  4XGH A;  1OWC A;  3ENJ A;  5CTS A;  4JAG A;  5CSC A;  2IFC A;  2CSC A;  1VGM A;  2CTS A; 
#chains in the Genus database with same CATH topology
 1NXE A;  4CSC A;  4E6Y A;  6CTS A;  1CSI A;  4JAE A;  2P2W A;  1CSH A;  3TQG A;  6CSC A;  1IOM A;  4CTS A;  1AJ8 A;  3MSU A;  5CSC B;  3O8J A;  1VGP A;  1NXG A;  1O7X A;  1IXE A;  1AL6 A;  2C6X A;  1CTS A;  1AMZ A;  4TVM A;  2R9E A;  4JAF A;  1A59 A;  4YBO A;  1CSR A;  3HWK A;  2R26 A;  2H12 A;  4G6B A;  4JAD A;  2IBP A;  1OWB A;  1CSC A;  3CSC A;  1CSS A;  4XGH A;  1OWC A;  3ENJ A;  5CTS A;  4JAG A;  5CSC A;  2IFC A;  2CSC A;  1VGM A;  2CTS A; 
#chains in the Genus database with same CATH homology
 1NXE A;  4CSC A;  4E6Y A;  6CTS A;  1CSI A;  4JAE A;  2P2W A;  1CSH A;  3TQG A;  6CSC A;  1IOM A;  4CTS A;  1AJ8 A;  3MSU A;  5CSC B;  3O8J A;  1VGP A;  1NXG A;  1O7X A;  1IXE A;  1AL6 A;  2C6X A;  1CTS A;  1AMZ A;  4TVM A;  2R9E A;  4JAF A;  1A59 A;  4YBO A;  1CSR A;  3HWK A;  2R26 A;  2H12 A;  4G6B A;  4JAD A;  2IBP A;  1OWB A;  1CSC A;  3CSC A;  1CSS A;  4XGH A;  1OWC A;  3ENJ A;  5CTS A;  4JAG A;  5CSC A;  2IFC A;  2CSC A;  1VGM A;  2CTS A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3O8JA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations