3OW2T

Crystal structure of enhanced macrolide bound to 50s ribosomal subunit
Total Genus 12

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
53
structure length
53
Chain Sequence
RECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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connected with : NaN
molecule tags Ribosome
molecule keywords 23S RIBOSOMAL RNA
total genus 12
structure length 53
sequence length 53
ec nomenclature
pdb deposition date 2010-09-17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.170.20 Mainly Beta Roll Ribosomal Protein L24e; Chain: T; Ribosomal Protein L24e; Chain: T; 3ow2T00
3I56U 1YJ9U 3CCMU 1KQST 1Q82V 1W2BT 1QVFT 3CMEU 3CCUU 1VQ7U 1VQ8U 1KC8V 3CCJU 1VQ4U 1VQMU 1VQ5U 2OTLU 3CMAU 3CXCT 2QA4U 1YHQU 1Q7YV 1M1KV 3CC4U 3G71U 1Q86V 3CD6U 3I55U 1S72U 1YIJU 3CCRU 1YJNU 1NJIV 1K8AV 1M90V 1VQ9U 1YITU 1VQLU 1YI2U 1VQPU 1N8RV 1KD1V 1K73V 2OTJU 1Q81V 1YJWU 3CCSU 1JJ2T 3CC2U 3G6EU 1VQNU 3CCLU 1VQOU 3CPWT 1K9MV 1QVGT 3OW2T 1VQ6U 5AN9G 3CCQU 2QEXU 3CCVU 3G4SU 1VQKU 3CC7U 3CCEU
chains in the Genus database with same CATH superfamily
1YJ9U 1W2BT 1Q7YV 5MLCY 3I55U 3J7ZX 5H1SY 1M90V 1VQ9U 3ABQA 1VQNU 1JJDA 3CPWT 1QVGT 5AN9G 3CCQU 2QEXU 3G4SU 3CC7U 2QEZA 1Q82V 1QVFT 1VQMU 2OTLU 3AO0A 3CMAU 2QA4U 1M1KV 3G71U 1Q86V 2JZ6A 1S72U 1YJNU 1N8RV 1JJ2T 3G6EU 1VQOU 3ABRA 3ABOA 1VQKU 3I56U 3CMEU 3CCUU 1VQ8U 3CCJU 1VQ4U 1VQ5U 3CXCT 1YHQU 5DM6U 1YIJU 1NJIV 1KD1V 1YJWU 3CCSU 3CCLU 1K9MV 3ABSA 1YI2U 3CCEU 3CCMU 1KQST 1VQ7U 1KC8V 3CC4U 3CD6U 3ANYA 3CCRU 1K8AV 1YITU 1VQLU 1VQPU 4UY8X 2OTJU 1K73V 1Q81V 3CC2U 3OW2T 1VQ6U 3CCVU
chains in the Genus database with same CATH topology
3I56U 1YJ9U 3CCMU 1KQST 1Q82V 1W2BT 1QVFT 3CMEU 3CCUU 1VQ7U 1VQ8U 1KC8V 3CCJU 1VQ4U 1VQMU 1VQ5U 2OTLU 3CMAU 3CXCT 2QA4U 1YHQU 1Q7YV 1M1KV 3CC4U 3G71U 1Q86V 3CD6U 3I55U 1S72U 1YIJU 3CCRU 1YJNU 1NJIV 1K8AV 1M90V 1VQ9U 1YITU 1VQLU 1YI2U 1VQPU 1N8RV 1KD1V 1K73V 2OTJU 1Q81V 1YJWU 3CCSU 1JJ2T 3CC2U 3G6EU 1VQNU 3CCLU 1JJDA 1VQOU 3CPWT 1K9MV 1QVGT 3OW2T 1VQ6U 5AN9G 3CCQU 2QEXU 3CCVU 3G4SU 1VQKU 3CC7U 3CCEU
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3I56 U;  1YJ9 U;  3CCM U;  1KQS T;  1Q82 V;  1W2B T;  1QVF T;  3CME U;  3CCU U;  1VQ7 U;  1VQ8 U;  1KC8 V;  3CCJ U;  1VQ4 U;  1VQM U;  1VQ5 U;  2OTL U;  3CMA U;  3CXC T;  2QA4 U;  1YHQ U;  1Q7Y V;  1M1K V;  3CC4 U;  3G71 U;  1Q86 V;  3CD6 U;  3I55 U;  1S72 U;  1YIJ U;  3CCR U;  1YJN U;  1NJI V;  1K8A V;  1M90 V;  1VQ9 U;  1YIT U;  1VQL U;  1YI2 U;  1VQP U;  1N8R V;  1KD1 V;  1K73 V;  2OTJ U;  1Q81 V;  1YJW U;  3CCS U;  1JJ2 T;  3CC2 U;  3G6E U;  1VQN U;  3CCL U;  1VQO U;  3CPW T;  1K9M V;  1QVG T;  3OW2 T;  1VQ6 U;  5AN9 G;  3CCQ U;  2QEX U;  3CCV U;  3G4S U;  1VQK U;  3CC7 U;  3CCE U; 
#chains in the Genus database with same CATH topology
 1YJ9 U;  1W2B T;  1Q7Y V;  5MLC Y;  3I55 U;  3J7Z X;  5H1S Y;  1M90 V;  1VQ9 U;  3ABQ A;  1VQN U;  1JJD A;  3CPW T;  1QVG T;  5AN9 G;  3CCQ U;  2QEX U;  3G4S U;  3CC7 U;  2QEZ A;  1Q82 V;  1QVF T;  1VQM U;  2OTL U;  3AO0 A;  3CMA U;  2QA4 U;  1M1K V;  3G71 U;  1Q86 V;  2JZ6 A;  1S72 U;  1YJN U;  1N8R V;  1JJ2 T;  3G6E U;  1VQO U;  3ABR A;  3ABO A;  1VQK U;  3I56 U;  3CME U;  3CCU U;  1VQ8 U;  3CCJ U;  1VQ4 U;  1VQ5 U;  3CXC T;  1YHQ U;  5DM6 U;  1YIJ U;  1NJI V;  1KD1 V;  1YJW U;  3CCS U;  3CCL U;  1K9M V;  3ABS A;  1YI2 U;  3CCE U;  3CCM U;  1KQS T;  1VQ7 U;  1KC8 V;  3CC4 U;  3CD6 U;  3ANY A;  3CCR U;  1K8A V;  1YIT U;  1VQL U;  1VQP U;  4UY8 X;  2OTJ U;  1K73 V;  1Q81 V;  3CC2 U;  3OW2 T;  1VQ6 U;  3CCV U; 
#chains in the Genus database with same CATH homology
 3I56 U;  1YJ9 U;  3CCM U;  1KQS T;  1Q82 V;  1W2B T;  1QVF T;  3CME U;  3CCU U;  1VQ7 U;  1VQ8 U;  1KC8 V;  3CCJ U;  1VQ4 U;  1VQM U;  1VQ5 U;  2OTL U;  3CMA U;  3CXC T;  2QA4 U;  1YHQ U;  1Q7Y V;  1M1K V;  3CC4 U;  3G71 U;  1Q86 V;  3CD6 U;  3I55 U;  1S72 U;  1YIJ U;  3CCR U;  1YJN U;  1NJI V;  1K8A V;  1M90 V;  1VQ9 U;  1YIT U;  1VQL U;  1YI2 U;  1VQP U;  1N8R V;  1KD1 V;  1K73 V;  2OTJ U;  1Q81 V;  1YJW U;  3CCS U;  1JJ2 T;  3CC2 U;  3G6E U;  1VQN U;  3CCL U;  1JJD A;  1VQO U;  3CPW T;  1K9M V;  1QVG T;  3OW2 T;  1VQ6 U;  5AN9 G;  3CCQ U;  2QEX U;  3CCV U;  3G4S U;  1VQK U;  3CC7 U;  3CCE U; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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