3PGEB

Structure of sumoylated pcna
Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
163
structure length
163
Chain Sequence
MLEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDSINIMIT

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
S1 (2-6)S8 (98-104)AH1 (9-18)TVIII1 (6-9)TIV1 (83-86)TI1 (19-22)EMPTYS2 (25-31)S5 (57-62)TI4 (41-44)TI5 (53-56)TIV2 (93-96)TVIII3 (105-108)TIV3 (155-158)S6 (66-71)S3 (34-40)S7 (87-92)AH2 (72-79)S4 (47-52)AH3 (141-153)S9 (111-117)Updating...
connected with : NaN
molecule tags Dna binding protein
source organism Saccharomyces cerevisiae
publication title Crystal Structure of SUMO-Modified Proliferating Cell Nuclear Antigen.
pubmed doi rcsb
molecule keywords SUMO-modified proliferating cell nuclear antigen
total genus 27
structure length 163
sequence length 163
ec nomenclature
pdb deposition date 2010-11-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.150.10 Alpha Beta Roll DNA Polymerase III; Chain A, domain 2 DNA Polymerase III, subunit A, domain 2 3pgeB00
4TR7A 3D1EA 3L10A 4K3MA 1UNNA 3P16A 4K74A 4K3QA 4N95A 5FVEA 2AWAA 4N99A 4PNVA 3QSBA 3Q4KA 4N96A 4TR8A 3F1VA 4N98A 2XURA 4MJPA 3L0WA 3L0XA 3PGEB 4TRTA 4TR6A 5AGVA 5AH4A 4K3RA 4RKIA 1MMIA 4K3SA 3T0PA 3Q4JA 4K3LA 2AVTA 4K3KA 4MJQA 4N97A 3D1FA 4OVHA 4PNWA 5FRQA 1OK7A 1JQLA 4OVGA 3D1GA 4N9AA 4S3IA 3QSBB 3BEPA 3PWEA 4N94A 5AH2A 4TSZA 4OVFA 1JQJA 4MJRA 4K3OA 3RB9A 4K3PA 3Q4LA 4PNUA 5AGUA 2POLA 1VPKA
chains in the Genus database with same CATH superfamily
4TR7A 3D1EA 3L10A 4K3MA 1UNNA 3P16A 4K74A 4K3QA 4N95A 5FVEA 2AWAA 4N99A 4PNVA 3QSBA 3Q4KA 4N96A 4TR8A 3F1VA 4N98A 2XURA 4MJPA 3L0WA 3L0XA 3PGEB 4TRTA 4TR6A 5AGVA 5AH4A 4K3RA 4RKIA 1MMIA 4K3SA 3T0PA 3Q4JA 4K3LA 2AVTA 4K3KA 4MJQA 4N97A 3D1FA 4OVHA 4PNWA 5FRQA 3L10B 1OK7A 1JQLA 4OVGA 3D1GA 4N9AA 4S3IA 3PGEA 3QSBB 3BEPA 3PWEA 4N94A 5AH2A 3L0WB 4TSZA 4OVFA 1JQJA 3L0XB 4MJRA 4K3OA 3RB9A 4K3PA 3Q4LA 4PNUA 5AGUA 2POLA 1VPKA
chains in the Genus database with same CATH topology
4TR7A 3D1EA 3L10A 4K3MA 1UNNA 3P16A 4K74A 4K3QA 4N95A 5FVEA 2AWAA 4N99A 4PNVA 3QSBA 3Q4KA 4N96A 4TR8A 3F1VA 4N98A 2XURA 4MJPA 3L0WA 3L0XA 3PGEB 4TRTA 4TR6A 5AGVA 5AH4A 4K3RA 4RKIA 1MMIA 4K3SA 3T0PA 3Q4JA 4K3LA 2AVTA 4K3KA 4MJQA 4N97A 3D1FA 4OVHA 4PNWA 5FRQA 1OK7A 1JQLA 4OVGA 3D1GA 4N9AA 4S3IA 3QSBB 3BEPA 3PWEA 4N94A 5AH2A 4TSZA 4OVFA 1JQJA 4MJRA 4K3OA 3RB9A 4K3PA 3Q4LA 4PNUA 5AGUA 2POLA 1VPKA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 4TR7 A;  3D1E A;  3L10 A;  4K3M A;  1UNN A;  3P16 A;  4K74 A;  4K3Q A;  4N95 A;  5FVE A;  2AWA A;  4N99 A;  4PNV A;  3QSB A;  3Q4K A;  4N96 A;  4TR8 A;  3F1V A;  4N98 A;  2XUR A;  4MJP A;  3L0W A;  3L0X A;  3PGE B;  4TRT A;  4TR6 A;  5AGV A;  5AH4 A;  4K3R A;  4RKI A;  1MMI A;  4K3S A;  3T0P A;  3Q4J A;  4K3L A;  2AVT A;  4K3K A;  4MJQ A;  4N97 A;  3D1F A;  4OVH A;  4PNW A;  5FRQ A;  1OK7 A;  1JQL A;  4OVG A;  3D1G A;  4N9A A;  4S3I A;  3QSB B;  3BEP A;  3PWE A;  4N94 A;  5AH2 A;  4TSZ A;  4OVF A;  1JQJ A;  4MJR A;  4K3O A;  3RB9 A;  4K3P A;  3Q4L A;  4PNU A;  5AGU A;  2POL A;  1VPK A; 
#chains in the Genus database with same CATH topology
 4TR7 A;  3D1E A;  3L10 A;  4K3M A;  1UNN A;  3P16 A;  4K74 A;  4K3Q A;  4N95 A;  5FVE A;  2AWA A;  4N99 A;  4PNV A;  3QSB A;  3Q4K A;  4N96 A;  4TR8 A;  3F1V A;  4N98 A;  2XUR A;  4MJP A;  3L0W A;  3L0X A;  3PGE B;  4TRT A;  4TR6 A;  5AGV A;  5AH4 A;  4K3R A;  4RKI A;  1MMI A;  4K3S A;  3T0P A;  3Q4J A;  4K3L A;  2AVT A;  4K3K A;  4MJQ A;  4N97 A;  3D1F A;  4OVH A;  4PNW A;  5FRQ A;  3L10 B;  1OK7 A;  1JQL A;  4OVG A;  3D1G A;  4N9A A;  4S3I A;  3PGE A;  3QSB B;  3BEP A;  3PWE A;  4N94 A;  5AH2 A;  3L0W B;  4TSZ A;  4OVF A;  1JQJ A;  3L0X B;  4MJR A;  4K3O A;  3RB9 A;  4K3P A;  3Q4L A;  4PNU A;  5AGU A;  2POL A;  1VPK A; 
#chains in the Genus database with same CATH homology
 4TR7 A;  3D1E A;  3L10 A;  4K3M A;  1UNN A;  3P16 A;  4K74 A;  4K3Q A;  4N95 A;  5FVE A;  2AWA A;  4N99 A;  4PNV A;  3QSB A;  3Q4K A;  4N96 A;  4TR8 A;  3F1V A;  4N98 A;  2XUR A;  4MJP A;  3L0W A;  3L0X A;  3PGE B;  4TRT A;  4TR6 A;  5AGV A;  5AH4 A;  4K3R A;  4RKI A;  1MMI A;  4K3S A;  3T0P A;  3Q4J A;  4K3L A;  2AVT A;  4K3K A;  4MJQ A;  4N97 A;  3D1F A;  4OVH A;  4PNW A;  5FRQ A;  1OK7 A;  1JQL A;  4OVG A;  3D1G A;  4N9A A;  4S3I A;  3QSB B;  3BEP A;  3PWE A;  4N94 A;  5AH2 A;  4TSZ A;  4OVF A;  1JQJ A;  4MJR A;  4K3O A;  3RB9 A;  4K3P A;  3Q4L A;  4PNU A;  5AGU A;  2POL A;  1VPK A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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