3RB9 | Genus

Total Genus 67

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	67
sequence length	395
structure length	395
Chain Sequence	VGLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGTGPGVGKDGLLGISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRMEFADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRLPG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 395 atoms

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395 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Mycobacterium tuberculosis
publication title	M. tuberculosis Sliding beta-Clamp Does Not Interact Directly with the NAD(+)-Dependent DNA Ligase pubmed doi rcsb
molecule keywords	DNA polymerase III subunit beta
total genus	67
structure length	395
sequence length	395
chains with identical sequence	B
ec nomenclature	ec 2.7.7.7: DNA-directed DNA polymerase.
pdb deposition date	2011-03-29

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00712	DNA_pol3_beta	DNA polymerase III beta subunit, N-terminal domain
A	PF02767	DNA_pol3_beta_2	DNA polymerase III beta subunit, central domain
A	PF02768	DNA_pol3_beta_3	DNA polymerase III beta subunit, C-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.150.10	Alpha Beta	Roll	DNA Polymerase III; Chain A, domain 2	DNA Polymerase III, subunit A, domain 2	3rb9A01
3.10.150.10	Alpha Beta	Roll	DNA Polymerase III; Chain A, domain 2	DNA Polymerase III, subunit A, domain 2	3rb9A02
3.10.150.10	Alpha Beta	Roll	DNA Polymerase III; Chain A, domain 2	DNA Polymerase III, subunit A, domain 2	3rb9A03

2AWAA 5AH2A 4N99A 4RKIA 3D1GA 1OK7A 1UNNA 3PWEA 4K3RA 4K3OA 4N94A 5AH4A 4OVGA 4TR7A 1JQLA 5FRQA 4N96A 4TR6A 5FVEA 4TRTA 4S3IA 3D1EA 3F1VA 4TR8A 5AGUA 3QSBB 1MMIA 3Q4JA 4N95A 3RB9A 3Q4LA 3L0XA 3L10A 4K74A 4K3PA 4K3MA 3QSBA 3PGEB 4OVHA 4N98A 4N97A 4MJQA 1JQJA 1VPKA 3D1FA 4K3LA 4MJRA 3P16A 4OVFA 4MJPA 4N9AA 5AGVA 3BEPA 4PNUA 3Q4KA 4K3SA 4PNWA 4PNVA 4K3KA 2AVTA 3L0WA 3T0PA 4K3QA 2XURA 2POLA 4TSZA
chains in the Genus database with same CATH superfamily

2AWAA 5AH2A 4N99A 4RKIA 3D1GA 1OK7A 1UNNA 3PWEA 4K3RA 4K3OA 4N94A 5AH4A 4OVGA 4TR7A 1JQLA 5FRQA 4N96A 4TR6A 5FVEA 4TRTA 4S3IA 3D1EA 3F1VA 3L0XB 3L10B 4TR8A 5AGUA 3QSBB 1MMIA 3Q4JA 4N95A 3RB9A 3Q4LA 3L0XA 3L10A 4K74A 4K3PA 4K3MA 3QSBA 3PGEB 4OVHA 4N98A 4N97A 4MJQA 1JQJA 1VPKA 3D1FA 4K3LA 4MJRA 3P16A 4OVFA 3L0WB 3PGEA 4MJPA 4N9AA 5AGVA 3BEPA 4PNUA 3Q4KA 4K3SA 4PNWA 4PNVA 4K3KA 2AVTA 3L0WA 3T0PA 4K3QA 2XURA 2POLA 4TSZA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2AWA A;  5AH2 A;  4N99 A;  4RKI A;  3D1G A;  1OK7 A;  1UNN A;  3PWE A;  4K3R A;  4K3O A;  4N94 A;  5AH4 A;  4OVG A;  4TR7 A;  1JQL A;  5FRQ A;  4N96 A;  4TR6 A;  5FVE A;  4TRT A;  4S3I A;  3D1E A;  3F1V A;  4TR8 A;  5AGU A;  3QSB B;  1MMI A;  3Q4J A;  4N95 A;  3RB9 A;  3Q4L A;  3L0X A;  3L10 A;  4K74 A;  4K3P A;  4K3M A;  3QSB A;  3PGE B;  4OVH A;  4N98 A;  4N97 A;  4MJQ A;  1JQJ A;  1VPK A;  3D1F A;  4K3L A;  4MJR A;  3P16 A;  4OVF A;  4MJP A;  4N9A A;  5AGV A;  3BEP A;  4PNU A;  3Q4K A;  4K3S A;  4PNW A;  4PNV A;  4K3K A;  2AVT A;  3L0W A;  3T0P A;  4K3Q A;  2XUR A;  2POL A;  4TSZ A; 
#chains in the Genus database with same CATH topology
 2AWA A;  5AH2 A;  4N99 A;  4RKI A;  3D1G A;  1OK7 A;  1UNN A;  3PWE A;  4K3R A;  4K3O A;  4N94 A;  5AH4 A;  4OVG A;  4TR7 A;  1JQL A;  5FRQ A;  4N96 A;  4TR6 A;  5FVE A;  4TRT A;  4S3I A;  3D1E A;  3F1V A;  3L0X B;  3L10 B;  4TR8 A;  5AGU A;  3QSB B;  1MMI A;  3Q4J A;  4N95 A;  3RB9 A;  3Q4L A;  3L0X A;  3L10 A;  4K74 A;  4K3P A;  4K3M A;  3QSB A;  3PGE B;  4OVH A;  4N98 A;  4N97 A;  4MJQ A;  1JQJ A;  1VPK A;  3D1F A;  4K3L A;  4MJR A;  3P16 A;  4OVF A;  3L0W B;  3PGE A;  4MJP A;  4N9A A;  5AGV A;  3BEP A;  4PNU A;  3Q4K A;  4K3S A;  4PNW A;  4PNV A;  4K3K A;  2AVT A;  3L0W A;  3T0P A;  4K3Q A;  2XUR A;  2POL A;  4TSZ A; 
#chains in the Genus database with same CATH homology
 2AWA A;  5AH2 A;  4N99 A;  4RKI A;  3D1G A;  1OK7 A;  1UNN A;  3PWE A;  4K3R A;  4K3O A;  4N94 A;  5AH4 A;  4OVG A;  4TR7 A;  1JQL A;  5FRQ A;  4N96 A;  4TR6 A;  5FVE A;  4TRT A;  4S3I A;  3D1E A;  3F1V A;  4TR8 A;  5AGU A;  3QSB B;  1MMI A;  3Q4J A;  4N95 A;  3RB9 A;  3Q4L A;  3L0X A;  3L10 A;  4K74 A;  4K3P A;  4K3M A;  3QSB A;  3PGE B;  4OVH A;  4N98 A;  4N97 A;  4MJQ A;  1JQJ A;  1VPK A;  3D1F A;  4K3L A;  4MJR A;  3P16 A;  4OVF A;  4MJP A;  4N9A A;  5AGV A;  3BEP A;  4PNU A;  3Q4K A;  4K3S A;  4PNW A;  4PNV A;  4K3K A;  2AVT A;  3L0W A;  3T0P A;  4K3Q A;  2XUR A;  2POL A;  4TSZ A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3RB9A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations