3T0P | Genus

Total Genus 92

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	92
sequence length	366
structure length	365
Chain Sequence	GMKLICSKANLLKGVNIVSKAVPTRTTMAILECILIDASANEIKLMANDMELGIETIIDGTIEERGIIALDAKIFSEIVRKLPDNDVTIETDASFKTVISCEKAKFNIIGKSGDDFSYIPYVERNESIVLSQFTLKEVIRQTIFSIADNDNNKLMTGELFEIEENKLRVVSLDGHRISIRYIEMKNHYDSKKVVVPGKTLQEISKIIPGSADEDVVIYITNNHIVFEFENTTVVSRLIEGEYFKIDQMLSSDYDTKVRINKRELLDCIDRATLLVKEDKKPIIMNITDGNMELRINSFIGSMNEDIDIDKDGKDIMIGFNPKFFIDALRVIDEEEVNLYMVNPKAPCFIKDDEGKFIYLILPVNF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Eubacterium rectale
publication title	Crystal structure of a Putative DNA polymerase III beta subunit (EUBREC_0002; ERE_29750) from Eubacterium rectale ATCC 33656 at 2.26 A resolution rcsb
molecule keywords	DNA polymerase III, beta subunit
total genus	92
structure length	365
sequence length	366
chains with identical sequence	B
ec nomenclature
pdb deposition date	2011-07-20

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00712	DNA_pol3_beta	DNA polymerase III beta subunit, N-terminal domain
A	PF02767	DNA_pol3_beta_2	DNA polymerase III beta subunit, central domain
A	PF02768	DNA_pol3_beta_3	DNA polymerase III beta subunit, C-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.150.10	Alpha Beta	Roll	DNA Polymerase III; Chain A, domain 2	DNA Polymerase III, subunit A, domain 2	3t0pA01
3.10.150.10	Alpha Beta	Roll	DNA Polymerase III; Chain A, domain 2	DNA Polymerase III, subunit A, domain 2	3t0pA02

5FRQA 4TRTA 4K3LA 4N96A 4K3SA 4K3QA 3Q4JA 3PWEA 3L10A 3QSBA 4PNWA 3T0PA 3D1EA 1JQLA 4OVFA 5AH2A 1VPKA 3Q4KA 1UNNA 4RKIA 3D1GA 4MJQA 4S3IA 4K3PA 4K3KA 4TR7A 4K3RA 4N97A 4TR6A 4N99A 3BEPA 5AGUA 4MJPA 1OK7A 4N94A 4N9AA 4TR8A 5FVEA 4TSZA 5AGVA 3QSBB 3F1VA 4PNUA 2XURA 5AH4A 3L0WA 3PGEB 4OVHA 1MMIA 3P16A 4OVGA 1JQJA 4K3MA 4N98A 3Q4LA 4N95A 4MJRA 3D1FA 2AWAA 4K3OA 4PNVA 3RB9A 3L0XA 2AVTA 2POLA 4K74A
chains in the Genus database with same CATH superfamily

5FRQA 4TRTA 4K3LA 4N96A 4K3SA 4K3QA 3Q4JA 3PWEA 3L10A 3QSBA 4PNWA 3T0PA 3D1EA 1JQLA 4OVFA 3PGEA 5AH2A 1VPKA 3Q4KA 1UNNA 3L0XB 3D1GA 4RKIA 4MJQA 4S3IA 4K3PA 4K3KA 4TR7A 4K3RA 4N97A 4TR6A 4N99A 3BEPA 5AGUA 4MJPA 1OK7A 4N94A 4N9AA 4TR8A 5FVEA 4TSZA 5AGVA 3L10B 3QSBB 3F1VA 4PNUA 2XURA 5AH4A 3L0WA 3PGEB 4OVHA 1MMIA 3P16A 4OVGA 1JQJA 4K3MA 4N98A 3Q4LA 4N95A 4MJRA 3D1FA 2AWAA 4K3OA 4PNVA 3RB9A 3L0XA 2AVTA 2POLA 3L0WB 4K74A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5FRQ A;  4TRT A;  4K3L A;  4N96 A;  4K3S A;  4K3Q A;  3Q4J A;  3PWE A;  3L10 A;  3QSB A;  4PNW A;  3T0P A;  3D1E A;  1JQL A;  4OVF A;  5AH2 A;  1VPK A;  3Q4K A;  1UNN A;  4RKI A;  3D1G A;  4MJQ A;  4S3I A;  4K3P A;  4K3K A;  4TR7 A;  4K3R A;  4N97 A;  4TR6 A;  4N99 A;  3BEP A;  5AGU A;  4MJP A;  1OK7 A;  4N94 A;  4N9A A;  4TR8 A;  5FVE A;  4TSZ A;  5AGV A;  3QSB B;  3F1V A;  4PNU A;  2XUR A;  5AH4 A;  3L0W A;  3PGE B;  4OVH A;  1MMI A;  3P16 A;  4OVG A;  1JQJ A;  4K3M A;  4N98 A;  3Q4L A;  4N95 A;  4MJR A;  3D1F A;  2AWA A;  4K3O A;  4PNV A;  3RB9 A;  3L0X A;  2AVT A;  2POL A;  4K74 A; 
#chains in the Genus database with same CATH topology
 5FRQ A;  4TRT A;  4K3L A;  4N96 A;  4K3S A;  4K3Q A;  3Q4J A;  3PWE A;  3L10 A;  3QSB A;  4PNW A;  3T0P A;  3D1E A;  1JQL A;  4OVF A;  3PGE A;  5AH2 A;  1VPK A;  3Q4K A;  1UNN A;  3L0X B;  3D1G A;  4RKI A;  4MJQ A;  4S3I A;  4K3P A;  4K3K A;  4TR7 A;  4K3R A;  4N97 A;  4TR6 A;  4N99 A;  3BEP A;  5AGU A;  4MJP A;  1OK7 A;  4N94 A;  4N9A A;  4TR8 A;  5FVE A;  4TSZ A;  5AGV A;  3L10 B;  3QSB B;  3F1V A;  4PNU A;  2XUR A;  5AH4 A;  3L0W A;  3PGE B;  4OVH A;  1MMI A;  3P16 A;  4OVG A;  1JQJ A;  4K3M A;  4N98 A;  3Q4L A;  4N95 A;  4MJR A;  3D1F A;  2AWA A;  4K3O A;  4PNV A;  3RB9 A;  3L0X A;  2AVT A;  2POL A;  3L0W B;  4K74 A; 
#chains in the Genus database with same CATH homology
 5FRQ A;  4TRT A;  4K3L A;  4N96 A;  4K3S A;  4K3Q A;  3Q4J A;  3PWE A;  3L10 A;  3QSB A;  4PNW A;  3T0P A;  3D1E A;  1JQL A;  4OVF A;  5AH2 A;  1VPK A;  3Q4K A;  1UNN A;  4RKI A;  3D1G A;  4MJQ A;  4S3I A;  4K3P A;  4K3K A;  4TR7 A;  4K3R A;  4N97 A;  4TR6 A;  4N99 A;  3BEP A;  5AGU A;  4MJP A;  1OK7 A;  4N94 A;  4N9A A;  4TR8 A;  5FVE A;  4TSZ A;  5AGV A;  3QSB B;  3F1V A;  4PNU A;  2XUR A;  5AH4 A;  3L0W A;  3PGE B;  4OVH A;  1MMI A;  3P16 A;  4OVG A;  1JQJ A;  4K3M A;  4N98 A;  3Q4L A;  4N95 A;  4MJR A;  3D1F A;  2AWA A;  4K3O A;  4PNV A;  3RB9 A;  3L0X A;  2AVT A;  2POL A;  4K74 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3T0PA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations