3T0P | Genus

Total Genus 92

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	92
sequence length	366
structure length	365
Chain Sequence	GMKLICSKANLLKGVNIVSKAVPTRTTMAILECILIDASANEIKLMANDMELGIETIIDGTIEERGIIALDAKIFSEIVRKLPDNDVTIETDASFKTVISCEKAKFNIIGKSGDDFSYIPYVERNESIVLSQFTLKEVIRQTIFSIADNDNNKLMTGELFEIEENKLRVVSLDGHRISIRYIEMKNHYDSKKVVVPGKTLQEISKIIPGSADEDVVIYITNNHIVFEFENTTVVSRLIEGEYFKIDQMLSSDYDTKVRINKRELLDCIDRATLLVKEDKKPIIMNITDGNMELRINSFIGSMNEDIDIDKDGKDIMIGFNPKFFIDALRVIDEEEVNLYMVNPKAPCFIKDDEGKFIYLILPVNF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 365 atoms

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365 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Eubacterium rectale
publication title	Crystal structure of a Putative DNA polymerase III beta subunit (EUBREC_0002; ERE_29750) from Eubacterium rectale ATCC 33656 at 2.26 A resolution rcsb
molecule keywords	DNA polymerase III, beta subunit
total genus	92
structure length	365
sequence length	366
chains with identical sequence	B
ec nomenclature
pdb deposition date	2011-07-20

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00712	DNA_pol3_beta	DNA polymerase III beta subunit, N-terminal domain
A	PF02767	DNA_pol3_beta_2	DNA polymerase III beta subunit, central domain
A	PF02768	DNA_pol3_beta_3	DNA polymerase III beta subunit, C-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.150.10	Alpha Beta	Roll	DNA Polymerase III; Chain A, domain 2	DNA Polymerase III, subunit A, domain 2	3t0pA01
3.10.150.10	Alpha Beta	Roll	DNA Polymerase III; Chain A, domain 2	DNA Polymerase III, subunit A, domain 2	3t0pA02

2AVTA 2XURA 3L0WA 1UNNA 4N9AA 3T0PA 2AWAA 1OK7A 3Q4JA 4K74A 4S3IA 4N94A 4K3LA 4MJRA 3P16A 3PWEA 4PNWA 4N96A 3L10A 5AH4A 5FRQA 4K3RA 4K3QA 4MJPA 4OVHA 4K3SA 4N99A 3QSBA 4K3KA 2POLA 3F1VA 4PNVA 5AGUA 4OVFA 4PNUA 5FVEA 3D1FA 1VPKA 3Q4LA 4TRTA 1MMIA 1JQJA 4N95A 4K3MA 4K3OA 4N98A 4RKIA 4TR8A 4TSZA 5AGVA 3D1EA 3BEPA 4OVGA 4MJQA 3Q4KA 4N97A 3QSBB 3L0XA 4K3PA 1JQLA 4TR6A 4TR7A 3RB9A 5AH2A 3D1GA 3PGEB
chains in the Genus database with same CATH superfamily

2AVTA 2XURA 3L0WA 1UNNA 4N9AA 3T0PA 2AWAA 1OK7A 3Q4JA 4K74A 4S3IA 4N94A 4K3LA 4MJRA 3P16A 3PWEA 4PNWA 4N96A 3L10A 3L0XB 5AH4A 5FRQA 4K3RA 4K3QA 4MJPA 4OVHA 4K3SA 4N99A 3QSBA 4K3KA 2POLA 3F1VA 4PNVA 5AGUA 4OVFA 4PNUA 5FVEA 3D1FA 1VPKA 3Q4LA 3L0WB 4TRTA 1MMIA 1JQJA 3PGEA 4K3MA 4K3OA 4N98A 4N95A 4RKIA 4TSZA 4TR8A 5AGVA 3D1EA 3BEPA 3L10B 4OVGA 4MJQA 3Q4KA 4N97A 3QSBB 3L0XA 4K3PA 1JQLA 4TR6A 4TR7A 3RB9A 5AH2A 3D1GA 3PGEB
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2AVT A;  2XUR A;  3L0W A;  1UNN A;  4N9A A;  3T0P A;  2AWA A;  1OK7 A;  3Q4J A;  4K74 A;  4S3I A;  4N94 A;  4K3L A;  4MJR A;  3P16 A;  3PWE A;  4PNW A;  4N96 A;  3L10 A;  5AH4 A;  5FRQ A;  4K3R A;  4K3Q A;  4MJP A;  4OVH A;  4K3S A;  4N99 A;  3QSB A;  4K3K A;  2POL A;  3F1V A;  4PNV A;  5AGU A;  4OVF A;  4PNU A;  5FVE A;  3D1F A;  1VPK A;  3Q4L A;  4TRT A;  1MMI A;  1JQJ A;  4N95 A;  4K3M A;  4K3O A;  4N98 A;  4RKI A;  4TR8 A;  4TSZ A;  5AGV A;  3D1E A;  3BEP A;  4OVG A;  4MJQ A;  3Q4K A;  4N97 A;  3QSB B;  3L0X A;  4K3P A;  1JQL A;  4TR6 A;  4TR7 A;  3RB9 A;  5AH2 A;  3D1G A;  3PGE B; 
#chains in the Genus database with same CATH topology
 2AVT A;  2XUR A;  3L0W A;  1UNN A;  4N9A A;  3T0P A;  2AWA A;  1OK7 A;  3Q4J A;  4K74 A;  4S3I A;  4N94 A;  4K3L A;  4MJR A;  3P16 A;  3PWE A;  4PNW A;  4N96 A;  3L10 A;  3L0X B;  5AH4 A;  5FRQ A;  4K3R A;  4K3Q A;  4MJP A;  4OVH A;  4K3S A;  4N99 A;  3QSB A;  4K3K A;  2POL A;  3F1V A;  4PNV A;  5AGU A;  4OVF A;  4PNU A;  5FVE A;  3D1F A;  1VPK A;  3Q4L A;  3L0W B;  4TRT A;  1MMI A;  1JQJ A;  3PGE A;  4K3M A;  4K3O A;  4N98 A;  4N95 A;  4RKI A;  4TSZ A;  4TR8 A;  5AGV A;  3D1E A;  3BEP A;  3L10 B;  4OVG A;  4MJQ A;  3Q4K A;  4N97 A;  3QSB B;  3L0X A;  4K3P A;  1JQL A;  4TR6 A;  4TR7 A;  3RB9 A;  5AH2 A;  3D1G A;  3PGE B; 
#chains in the Genus database with same CATH homology
 2AVT A;  2XUR A;  3L0W A;  1UNN A;  4N9A A;  3T0P A;  2AWA A;  1OK7 A;  3Q4J A;  4K74 A;  4S3I A;  4N94 A;  4K3L A;  4MJR A;  3P16 A;  3PWE A;  4PNW A;  4N96 A;  3L10 A;  5AH4 A;  5FRQ A;  4K3R A;  4K3Q A;  4MJP A;  4OVH A;  4K3S A;  4N99 A;  3QSB A;  4K3K A;  2POL A;  3F1V A;  4PNV A;  5AGU A;  4OVF A;  4PNU A;  5FVE A;  3D1F A;  1VPK A;  3Q4L A;  4TRT A;  1MMI A;  1JQJ A;  4N95 A;  4K3M A;  4K3O A;  4N98 A;  4RKI A;  4TR8 A;  4TSZ A;  5AGV A;  3D1E A;  3BEP A;  4OVG A;  4MJQ A;  3Q4K A;  4N97 A;  3QSB B;  3L0X A;  4K3P A;  1JQL A;  4TR6 A;  4TR7 A;  3RB9 A;  5AH2 A;  3D1G A;  3PGE B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3T0PA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations