3TQG | Genus

Total Genus 115

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	115
sequence length	360
structure length	360
Chain Sequence	AGETSIATVGKEGHGLTYRGYRIEDLAANATFEEVAYLLLKNKLPTKSELDAYTKKLVNLRSLPPALKDTLERIPASSHPMDVMRTGCSMLGNLEPENGFENEQNIADRLVAIFPAIQCYWYHYSHHGKRIDTELDDLTLAGYFLHLLLGKKAAQMAIDCMNASLILYAEHEFNASTFAARVCSATLSDIYSAVTAAIATLRGPLHGGANEAAMDLIMLYKTPSEAIAGIKRKLANKELIMGFGHAVYRERDPRNAIIKSWAQKLAPNAADGYLFDISDAIENTMQDEKKLFPNLDFYSATAYHFLNIPTKLFTPIFVMSRVTGWCAHIFEQRKDNRIIRPNADYIGPEEQGWVPIEKRR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Coxiella burnetii
publication title	Structural genomics for drug design against the pathogen Coxiella burnetii. pubmed doi rcsb
molecule keywords	2-methylcitrate synthase
total genus	115
structure length	360
sequence length	360
chains with identical sequence	B
ec nomenclature	ec 2.3.3.5: 2-methylcitrate synthase.
pdb deposition date	2011-09-09

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00285	Citrate_synt	Citrate synthase, C-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.230.10	Mainly Alpha	Orthogonal Bundle	Cytochrome p450-Terp; domain 2	Cytochrome P450-Terp, domain 2	3tqgA02
1.10.580.10	Mainly Alpha	Orthogonal Bundle	Citrate Synthase; domain 1	Citrate Synthase, domain 1	3tqgA01

1AMZA 1CSCA 1CSIA 6CSCA 4XGHA 5CTSA 4G6BA 2R26A 6CTSA 4JAEA 5CSCA 1AL6A 1CSSA 2CSCA 3ENJA 3O8JA 1CTSA 1IOMA 2C6XA 4CTSA 1AJ8A 2H12A 2R9EA 1IXEA 4JADA 4JAGA 4E6YA 1CSHA 1NXGA 1VGPA 4JAFA 2CTSA 1VGMA 5CSCB 1NXEA 2P2WA 3MSUA 4CSCA 1OWCA 3TQGA 1CSRA 2IBPA 1O7XA 1OWBA 3CSCA 4TVMA 3HWKA 2IFCA 4YBOA 1A59A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1AMZ A;  1CSC A;  1CSI A;  6CSC A;  4XGH A;  5CTS A;  4G6B A;  2R26 A;  6CTS A;  4JAE A;  5CSC A;  1AL6 A;  1CSS A;  2CSC A;  3ENJ A;  3O8J A;  1CTS A;  1IOM A;  2C6X A;  4CTS A;  1AJ8 A;  2H12 A;  2R9E A;  1IXE A;  4JAD A;  4JAG A;  4E6Y A;  1CSH A;  1NXG A;  1VGP A;  4JAF A;  2CTS A;  1VGM A;  5CSC B;  1NXE A;  2P2W A;  3MSU A;  4CSC A;  1OWC A;  3TQG A;  1CSR A;  2IBP A;  1O7X A;  1OWB A;  3CSC A;  4TVM A;  3HWK A;  2IFC A;  4YBO A;  1A59 A; 
#chains in the Genus database with same CATH topology
 1AMZ A;  1CSC A;  1CSI A;  6CSC A;  4XGH A;  5CTS A;  4G6B A;  2R26 A;  6CTS A;  4JAE A;  5CSC A;  1AL6 A;  1CSS A;  2CSC A;  3ENJ A;  3O8J A;  1CTS A;  1IOM A;  2C6X A;  4CTS A;  1AJ8 A;  2H12 A;  2R9E A;  1IXE A;  4JAD A;  4JAG A;  4E6Y A;  1CSH A;  1NXG A;  1VGP A;  4JAF A;  2CTS A;  1VGM A;  5CSC B;  1NXE A;  2P2W A;  3MSU A;  4CSC A;  1OWC A;  3TQG A;  1CSR A;  2IBP A;  1O7X A;  1OWB A;  3CSC A;  4TVM A;  3HWK A;  2IFC A;  4YBO A;  1A59 A; 
#chains in the Genus database with same CATH homology
 1AMZ A;  1CSC A;  1CSI A;  6CSC A;  4XGH A;  5CTS A;  4G6B A;  2R26 A;  6CTS A;  4JAE A;  5CSC A;  1AL6 A;  1CSS A;  2CSC A;  3ENJ A;  3O8J A;  1CTS A;  1IOM A;  2C6X A;  4CTS A;  1AJ8 A;  2H12 A;  2R9E A;  1IXE A;  4JAD A;  4JAG A;  4E6Y A;  1CSH A;  1NXG A;  1VGP A;  4JAF A;  2CTS A;  1VGM A;  5CSC B;  1NXE A;  2P2W A;  3MSU A;  4CSC A;  1OWC A;  3TQG A;  1CSR A;  2IBP A;  1O7X A;  1OWB A;  3CSC A;  4TVM A;  3HWK A;  2IFC A;  4YBO A;  1A59 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3TQGA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations