3VJ7 | Genus

Total Genus 25

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	25
sequence length	94
structure length	94
Chain Sequence	PGLKIDQKIRGQMPEQGWTEDDIKNTVSNGATGTSFDKRSPKKTPPDYLGRNDPATVYGSPGKYVVVNDRTGEVTQISDKTDPGWVDDSRIQWG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Identification of the catalytic residues of sequence-specific and histidine-free ribonuclease colicin E5 pubmed doi rcsb
molecule keywords	Colicin-E5
molecule tags	Hydrolase
source organism	Escherichia coli
total genus	25
structure length	94
sequence length	94
ec nomenclature	ec 3.1.-.-:
pdb deposition date	2011-10-13

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF12106	Colicin_E5	Colicin E5 ribonuclease domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.2310.30	Alpha Beta	2-Layer Sandwich	YaeB-like fold	YaeB-like fold	3vj7A00

3VJ7A 2DFXE 2DJHA 2A8KA 2FHZB 3AO9A
chains in the Genus database with same CATH superfamily

1XQBA 2KC9A 4LSYA 5CZEB 4MCXB 4FBDA 3KXEA 2A6SA 2PD0A 2FHZB 5CZFC 4PX8A 5CW7B 4MMGA 1WMIA 4LS4A 4NRNA 2DFXE 2DJHA 3BPQB 5CEGB 4FXED 4LTTA 2OTRA 2A6RA 2KC8A 5IWHA 4FXIA 3HI2B 4MCTB 2A6QE 4Q2UB 5IXLA 4MMJA 4YY3Y 3G5OB 2A8KA 4ML2A 3AO9A 3VJ7A 4FXHA 4ML0B 1Z8MA 2KHEA 3OEIC
chains in the Genus database with same CATH topology

3VJ7A 2DFXE 2DJHA 3HI2B 4FBDA 2PD0A 2A8KA 2FHZB 3AO9A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3VJ7 A;  2DFX E;  2DJH A;  2A8K A;  2FHZ B;  3AO9 A; 
#chains in the Genus database with same CATH topology
 1XQB A;  2KC9 A;  4LSY A;  5CZE B;  4MCX B;  4FBD A;  3KXE A;  2A6S A;  2PD0 A;  2FHZ B;  5CZF C;  4PX8 A;  5CW7 B;  4MMG A;  1WMI A;  4LS4 A;  4NRN A;  2DFX E;  2DJH A;  3BPQ B;  5CEG B;  4FXE D;  4LTT A;  2OTR A;  2A6R A;  2KC8 A;  5IWH A;  4FXI A;  3HI2 B;  4MCT B;  2A6Q E;  4Q2U B;  5IXL A;  4MMJ A;  4YY3 Y;  3G5O B;  2A8K A;  4ML2 A;  3AO9 A;  3VJ7 A;  4FXH A;  4ML0 B;  1Z8M A;  2KHE A;  3OEI C; 
#chains in the Genus database with same CATH homology
 3VJ7 A;  2DFX E;  2DJH A;  3HI2 B;  4FBD A;  2PD0 A;  2A8K A;  2FHZ B;  3AO9 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3VJ7A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations