3CC2 | Genus

Total Genus 10

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	10
sequence length	53
structure length	53
Chain Sequence	RECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTAR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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Viewer cachePut cache://localLOAD_/file/5d25303ff054ea7ded08c37b/pdb.gz

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The Resolver thinks Pdb

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Time for openFile(/file/5d25303ff054ea7ded08c37b/pdb.gz): 1404 ms

reading 53 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

53 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 14 ms

Adding embedded #jmolscript: select ({0:52});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ribosome
publication title	Mutations outside the anisomycin-binding site can make ribosomes drug-resistant. pubmed doi rcsb
molecule keywords	50S ribosomal protein L2P
total genus	10
structure length	53
sequence length	53
ec nomenclature
pdb deposition date	2008-02-23

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
U	PF01246	Ribosomal_L24e	Ribosomal protein L24e

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.170.20	Mainly Beta	Roll	Ribosomal Protein L24e; Chain: T;	Ribosomal Protein L24e; Chain: T;	3cc2U00

1YJ9U 1VQ6U 3CCVU 3CCJU 1Q82V 1VQ7U 5AN9G 1YI2U 3CC7U 1K8AV 1M90V 3CD6U 1Q81V 3CMEU 3CCUU 2QEXU 1M1KV 1VQ9U 1W2BT 3CCRU 3I55U 3CXCT 1K73V 1YJWU 1VQPU 3G71U 3I56U 1VQ5U 1VQNU 1KC8V 1QVFT 1YIJU 1JJ2T 3CCLU 3G4SU 1QVGT 1VQMU 1K9MV 1VQ4U 2OTJU 1N8RV 1Q86V 1VQOU 1Q7YV 1KD1V 1YITU 1NJIV 1VQLU 3CCMU 1KQST 2QA4U 1VQKU 2OTLU 3CCQU 3CC4U 1YJNU 3CC2U 1VQ8U 3CCEU 3CCSU 1YHQU 3G6EU 3OW2T 1S72U 3CPWT 3CMAU
chains in the Genus database with same CATH superfamily

3CCVU 3ABSA 3ABRA 3CCUU 3CXCT 3AO0A 1KC8V 1JJ2T 3CCLU 1QVGT 1VQ4U 1JJDA 3J7ZX 1VQOU 1KD1V 4UY8X 3CCMU 3CCQU 1YJNU 2QEZA 1K8AV 3ANYA 3CD6U 1Q81V 2QEXU 1VQ9U 1W2BT 3CCRU 1K73V 1K9MV 2OTJU 1N8RV 1VQKU 2OTLU 3CC2U 1VQ8U 1S72U 1YJ9U 3CCJU 1Q82V 1VQ7U 3CC7U 1YI2U 1M90V 3ABQA 3I55U 3G71U 1VQ5U 1YIJU 5MLCY 1VQMU 1Q7YV 1VQLU 2QA4U 3CC4U 3G6EU 3OW2T 3CPWT 3CMAU 1VQ6U 3ABOA 5AN9G 3CMEU 5H1SY 1M1KV 1YJWU 1VQPU 3I56U 1VQNU 1QVFT 3G4SU 5DM6U 1Q86V 1YITU 1NJIV 2JZ6A 1KQST 3CCEU 3CCSU 1YHQU
chains in the Genus database with same CATH topology

1YJ9U 1VQ6U 3CCVU 3CCJU 1Q82V 1VQ7U 5AN9G 1YI2U 3CC7U 1K8AV 1M90V 3CD6U 1Q81V 3CMEU 3CCUU 2QEXU 1M1KV 1VQ9U 1W2BT 3CCRU 3I55U 3CXCT 1K73V 1YJWU 1VQPU 3G71U 3I56U 1VQ5U 1VQNU 1KC8V 1QVFT 1YIJU 1JJ2T 3CCLU 3G4SU 1QVGT 1VQMU 1K9MV 1VQ4U 2OTJU 1N8RV 1JJDA 1Q86V 1VQOU 1Q7YV 1KD1V 1YITU 1NJIV 1VQLU 3CCMU 1KQST 2QA4U 1VQKU 2OTLU 3CCQU 3CC4U 1YJNU 3CC2U 1VQ8U 3CCEU 3CCSU 1YHQU 3G6EU 3OW2T 1S72U 3CPWT 3CMAU
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1YJ9 U;  1VQ6 U;  3CCV U;  3CCJ U;  1Q82 V;  1VQ7 U;  5AN9 G;  1YI2 U;  3CC7 U;  1K8A V;  1M90 V;  3CD6 U;  1Q81 V;  3CME U;  3CCU U;  2QEX U;  1M1K V;  1VQ9 U;  1W2B T;  3CCR U;  3I55 U;  3CXC T;  1K73 V;  1YJW U;  1VQP U;  3G71 U;  3I56 U;  1VQ5 U;  1VQN U;  1KC8 V;  1QVF T;  1YIJ U;  1JJ2 T;  3CCL U;  3G4S U;  1QVG T;  1VQM U;  1K9M V;  1VQ4 U;  2OTJ U;  1N8R V;  1Q86 V;  1VQO U;  1Q7Y V;  1KD1 V;  1YIT U;  1NJI V;  1VQL U;  3CCM U;  1KQS T;  2QA4 U;  1VQK U;  2OTL U;  3CCQ U;  3CC4 U;  1YJN U;  3CC2 U;  1VQ8 U;  3CCE U;  3CCS U;  1YHQ U;  3G6E U;  3OW2 T;  1S72 U;  3CPW T;  3CMA U; 
#chains in the Genus database with same CATH topology
 3CCV U;  3ABS A;  3ABR A;  3CCU U;  3CXC T;  3AO0 A;  1KC8 V;  1JJ2 T;  3CCL U;  1QVG T;  1VQ4 U;  1JJD A;  3J7Z X;  1VQO U;  1KD1 V;  4UY8 X;  3CCM U;  3CCQ U;  1YJN U;  2QEZ A;  1K8A V;  3ANY A;  3CD6 U;  1Q81 V;  2QEX U;  1VQ9 U;  1W2B T;  3CCR U;  1K73 V;  1K9M V;  2OTJ U;  1N8R V;  1VQK U;  2OTL U;  3CC2 U;  1VQ8 U;  1S72 U;  1YJ9 U;  3CCJ U;  1Q82 V;  1VQ7 U;  3CC7 U;  1YI2 U;  1M90 V;  3ABQ A;  3I55 U;  3G71 U;  1VQ5 U;  1YIJ U;  5MLC Y;  1VQM U;  1Q7Y V;  1VQL U;  2QA4 U;  3CC4 U;  3G6E U;  3OW2 T;  3CPW T;  3CMA U;  1VQ6 U;  3ABO A;  5AN9 G;  3CME U;  5H1S Y;  1M1K V;  1YJW U;  1VQP U;  3I56 U;  1VQN U;  1QVF T;  3G4S U;  5DM6 U;  1Q86 V;  1YIT U;  1NJI V;  2JZ6 A;  1KQS T;  3CCE U;  3CCS U;  1YHQ U; 
#chains in the Genus database with same CATH homology
 1YJ9 U;  1VQ6 U;  3CCV U;  3CCJ U;  1Q82 V;  1VQ7 U;  5AN9 G;  1YI2 U;  3CC7 U;  1K8A V;  1M90 V;  3CD6 U;  1Q81 V;  3CME U;  3CCU U;  2QEX U;  1M1K V;  1VQ9 U;  1W2B T;  3CCR U;  3I55 U;  3CXC T;  1K73 V;  1YJW U;  1VQP U;  3G71 U;  3I56 U;  1VQ5 U;  1VQN U;  1KC8 V;  1QVF T;  1YIJ U;  1JJ2 T;  3CCL U;  3G4S U;  1QVG T;  1VQM U;  1K9M V;  1VQ4 U;  2OTJ U;  1N8R V;  1JJD A;  1Q86 V;  1VQO U;  1Q7Y V;  1KD1 V;  1YIT U;  1NJI V;  1VQL U;  3CCM U;  1KQS T;  2QA4 U;  1VQK U;  2OTL U;  3CCQ U;  3CC4 U;  1YJN U;  3CC2 U;  1VQ8 U;  3CCE U;  3CCS U;  1YHQ U;  3G6E U;  3OW2 T;  1S72 U;  3CPW T;  3CMA U;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3CC2U

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations