4CTS | Genus

Total Genus 130

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	130
sequence length	437
structure length	437
Chain Sequence	ASSTNLKDILADLIPKEQARIKTFRQQHGNTVVGQITVDMMYGGMRGMKGLVYETSVLDPDEGIRFRGYSIPECQKMLPKAKGGEEPLPEGLFWLLVTGQIPTEEQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGIHRTKYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPHDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGLIKLVDSK

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxo-acid-lyase
source organism	Sus scrofa
publication title	Crystal structure analysis and molecular model of a complex of citrate synthase with oxaloacetate and S-acetonyl-coenzyme A pubmed doi rcsb
molecule keywords	CITRATE SYNTHASE
total genus	130
structure length	437
sequence length	437
chains with identical sequence	B
ec nomenclature	ec 2.3.3.1: Citrate (Si)-synthase.
pdb deposition date	1984-01-27

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00285	Citrate_synt	Citrate synthase, C-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.230.10	Mainly Alpha	Orthogonal Bundle	Cytochrome p450-Terp; domain 2	Cytochrome P450-Terp, domain 2	4ctsA02
1.10.580.10	Mainly Alpha	Orthogonal Bundle	Citrate Synthase; domain 1	Citrate Synthase, domain 1	4ctsA01

1CSRA 3MSUA 4G6BA 1AMZA 1VGPA 3CSCA 4JAGA 1O7XA 3TQGA 1AL6A 2P2WA 2R26A 5CTSA 1CSCA 6CTSA 1NXGA 2CSCA 2CTSA 1CSHA 4JADA 4CSCA 1A59A 1OWCA 6CSCA 1CSSA 4TVMA 2IBPA 4XGHA 1AJ8A 4JAFA 1VGMA 2H12A 5CSCB 1NXEA 5CSCA 1IXEA 2R9EA 3ENJA 4YBOA 1OWBA 2C6XA 4CTSA 1CTSA 3HWKA 3O8JA 1IOMA 2IFCA 4JAEA 4E6YA 1CSIA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1CSR A;  3MSU A;  4G6B A;  1AMZ A;  1VGP A;  3CSC A;  4JAG A;  1O7X A;  3TQG A;  1AL6 A;  2P2W A;  2R26 A;  5CTS A;  1CSC A;  6CTS A;  1NXG A;  2CSC A;  2CTS A;  1CSH A;  4JAD A;  4CSC A;  1A59 A;  1OWC A;  6CSC A;  1CSS A;  4TVM A;  2IBP A;  4XGH A;  1AJ8 A;  4JAF A;  1VGM A;  2H12 A;  5CSC B;  1NXE A;  5CSC A;  1IXE A;  2R9E A;  3ENJ A;  4YBO A;  1OWB A;  2C6X A;  4CTS A;  1CTS A;  3HWK A;  3O8J A;  1IOM A;  2IFC A;  4JAE A;  4E6Y A;  1CSI A; 
#chains in the Genus database with same CATH topology
 1CSR A;  3MSU A;  4G6B A;  1AMZ A;  1VGP A;  3CSC A;  4JAG A;  1O7X A;  3TQG A;  1AL6 A;  2P2W A;  2R26 A;  5CTS A;  1CSC A;  6CTS A;  1NXG A;  2CSC A;  2CTS A;  1CSH A;  4JAD A;  4CSC A;  1A59 A;  1OWC A;  6CSC A;  1CSS A;  4TVM A;  2IBP A;  4XGH A;  1AJ8 A;  4JAF A;  1VGM A;  2H12 A;  5CSC B;  1NXE A;  5CSC A;  1IXE A;  2R9E A;  3ENJ A;  4YBO A;  1OWB A;  2C6X A;  4CTS A;  1CTS A;  3HWK A;  3O8J A;  1IOM A;  2IFC A;  4JAE A;  4E6Y A;  1CSI A; 
#chains in the Genus database with same CATH homology
 1CSR A;  3MSU A;  4G6B A;  1AMZ A;  1VGP A;  3CSC A;  4JAG A;  1O7X A;  3TQG A;  1AL6 A;  2P2W A;  2R26 A;  5CTS A;  1CSC A;  6CTS A;  1NXG A;  2CSC A;  2CTS A;  1CSH A;  4JAD A;  4CSC A;  1A59 A;  1OWC A;  6CSC A;  1CSS A;  4TVM A;  2IBP A;  4XGH A;  1AJ8 A;  4JAF A;  1VGM A;  2H12 A;  5CSC B;  1NXE A;  5CSC A;  1IXE A;  2R9E A;  3ENJ A;  4YBO A;  1OWB A;  2C6X A;  4CTS A;  1CTS A;  3HWK A;  3O8J A;  1IOM A;  2IFC A;  4JAE A;  4E6Y A;  1CSI A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4CTSA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations