4FBD | Genus

Total Genus 43

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	43
sequence length	214
structure length	204
Chain Sequence	RPAPADLPLGLDPFCYSRISGVTKEEFLEKVNELVTRDAGIEFFQGYAPFCRHLYIPNFVGALPGSLPITADNEHLLRSGYIARRPNELPVLTRWFPMSYAKDALMPAAFLDLILYSREQIAKETAAESNTAVVIDPNAPAWSIIAVKAQNEKYSLPMAPITMLRNTLIEEGGSGVALDREAYKASVAYWKTHAIVMDKESSLE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	2.35 Angstrom Crystal Structure of Conserved Hypothetical Protein from Toxoplasma gondii ME49. rcsb
molecule keywords	Putative uncharacterized protein
molecule tags	Unknown function
source organism	Toxoplasma gondii
total genus	43
structure length	204
sequence length	214
chains with identical sequence	B
ec nomenclature
pdb deposition date	2012-05-22

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.2310.50	Alpha Beta	2-Layer Sandwich	YaeB-like fold	YaeB-like fold	4fbdA01

4FBDA 2PD0A
chains in the Genus database with same CATH superfamily

1XQBA 4ML2A 1WMIA 2KC8A 4MCXB 2KC9A 4LSYA 4ML0B 5CZFC 4FBDA 4MCTB 5IXLA 4LS4A 3VJ7A 2A8KA 5CW7B 4LTTA 4Q2UB 2DFXE 4FXHA 3BPQB 4FXED 2OTRA 3AO9A 4MMGA 5IWHA 4FXIA 3HI2B 2DJHA 4MMJA 2KHEA 2FHZB 4NRNA 1Z8MA 2A6QE 3G5OB 4PX8A 4YY3Y 2PD0A 2A6RA 3KXEA 5CZEB 2A6SA 5CEGB 3OEIC
chains in the Genus database with same CATH topology

2A8KA 3HI2B 2DJHA 3AO9A 2DFXE 2FHZB 4FBDA 2PD0A 3VJ7A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4FBD A;  2PD0 A; 
#chains in the Genus database with same CATH topology
 1XQB A;  4ML2 A;  1WMI A;  2KC8 A;  4MCX B;  2KC9 A;  4LSY A;  4ML0 B;  5CZF C;  4FBD A;  4MCT B;  5IXL A;  4LS4 A;  3VJ7 A;  2A8K A;  5CW7 B;  4LTT A;  4Q2U B;  2DFX E;  4FXH A;  3BPQ B;  4FXE D;  2OTR A;  3AO9 A;  4MMG A;  5IWH A;  4FXI A;  3HI2 B;  2DJH A;  4MMJ A;  2KHE A;  2FHZ B;  4NRN A;  1Z8M A;  2A6Q E;  3G5O B;  4PX8 A;  4YY3 Y;  2PD0 A;  2A6R A;  3KXE A;  5CZE B;  2A6S A;  5CEG B;  3OEI C; 
#chains in the Genus database with same CATH homology
 2A8K A;  3HI2 B;  2DJH A;  3AO9 A;  2DFX E;  2FHZ B;  4FBD A;  2PD0 A;  3VJ7 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4FBDA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN