4FXI | Genus

Total Genus 31

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	31
sequence length	94
structure length	93
Chain Sequence	AYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDYKIKLRSSGYRLVYQVIDEKVVVFVISVGKAERSEVYSEAVKRIL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 93 atoms

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93 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	The crystal structure of the intact E. coli RelBE toxin-antitoxin complex provides the structural basis for conditional cooperativity. pubmed doi rcsb
molecule keywords	mRNA interferase RelE
molecule tags	Toxin
source organism	Escherichia coli
total genus	31
structure length	93
sequence length	94
chains with identical sequence	B, C
ec nomenclature	ec 3.1.-.-:
pdb deposition date	2012-07-03

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF05016	ParE_toxin	ParE toxin of type II toxin-antitoxin system, parDE

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.2310.20	Alpha Beta	2-Layer Sandwich	YaeB-like fold	RelE-like	4fxiA00

2KC9A 4LSYA 5CZEB 4MCXB 3KXEA 2A6SA 5CZFC 4PX8A 5CW7B 4MMGA 1WMIA 4LS4A 4NRNA 5CEGB 3BPQB 4FXED 4LTTA 2OTRA 2A6RA 2KC8A 5IWHA 4FXIA 4MCTB 4Q2UB 2A6QE 5IXLA 4YY3Y 4MMJA 3G5OB 4ML2A 4FXHA 4ML0B 1Z8MA 2KHEA 3OEIC
chains in the Genus database with same CATH superfamily

1XQBA 2KC9A 4LSYA 5CZEB 4MCXB 4FBDA 3KXEA 2A6SA 2PD0A 2FHZB 5CZFC 4PX8A 5CW7B 4MMGA 1WMIA 4LS4A 4NRNA 2DFXE 2DJHA 3BPQB 5CEGB 4FXED 4LTTA 2OTRA 2A6RA 2KC8A 5IWHA 4FXIA 3HI2B 4MCTB 2A6QE 4Q2UB 5IXLA 4MMJA 4YY3Y 3G5OB 2A8KA 4ML2A 3AO9A 3VJ7A 4FXHA 4ML0B 1Z8MA 2KHEA 3OEIC
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2KC9 A;  4LSY A;  5CZE B;  4MCX B;  3KXE A;  2A6S A;  5CZF C;  4PX8 A;  5CW7 B;  4MMG A;  1WMI A;  4LS4 A;  4NRN A;  5CEG B;  3BPQ B;  4FXE D;  4LTT A;  2OTR A;  2A6R A;  2KC8 A;  5IWH A;  4FXI A;  4MCT B;  4Q2U B;  2A6Q E;  5IXL A;  4YY3 Y;  4MMJ A;  3G5O B;  4ML2 A;  4FXH A;  4ML0 B;  1Z8M A;  2KHE A;  3OEI C; 
#chains in the Genus database with same CATH topology
 1XQB A;  2KC9 A;  4LSY A;  5CZE B;  4MCX B;  4FBD A;  3KXE A;  2A6S A;  2PD0 A;  2FHZ B;  5CZF C;  4PX8 A;  5CW7 B;  4MMG A;  1WMI A;  4LS4 A;  4NRN A;  2DFX E;  2DJH A;  3BPQ B;  5CEG B;  4FXE D;  4LTT A;  2OTR A;  2A6R A;  2KC8 A;  5IWH A;  4FXI A;  3HI2 B;  4MCT B;  2A6Q E;  4Q2U B;  5IXL A;  4MMJ A;  4YY3 Y;  3G5O B;  2A8K A;  4ML2 A;  3AO9 A;  3VJ7 A;  4FXH A;  4ML0 B;  1Z8M A;  2KHE A;  3OEI C; 
#chains in the Genus database with same CATH homology
 2KC9 A;  4LSY A;  5CZE B;  4MCX B;  3KXE A;  2A6S A;  5CZF C;  4PX8 A;  5CW7 B;  4MMG A;  1WMI A;  4LS4 A;  4NRN A;  5CEG B;  3BPQ B;  4FXE D;  4LTT A;  2OTR A;  2A6R A;  2KC8 A;  5IWH A;  4FXI A;  4MCT B;  4Q2U B;  2A6Q E;  5IXL A;  4YY3 Y;  4MMJ A;  3G5O B;  4ML2 A;  4FXH A;  4ML0 B;  1Z8M A;  2KHE A;  3OEI C;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4FXIA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations