4K3O | Genus

Total Genus 88

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	88
sequence length	365
structure length	360
Chain Sequence	MKFTVEREHLLKPLQQVSGPLLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 360 atoms

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360 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Escherichia coli
publication title	Structural and Thermodynamic Dissection of Linear Motif Recognition by the E. coli Sliding Clamp pubmed doi rcsb
molecule keywords	DNA polymerase III subunit beta
total genus	88
structure length	360
sequence length	365
chains with identical sequence	B
ec nomenclature	ec 2.7.7.7: DNA-directed DNA polymerase.
pdb deposition date	2013-04-11

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00712	DNA_pol3_beta	DNA polymerase III beta subunit, N-terminal domain
A	PF02767	DNA_pol3_beta_2	DNA polymerase III beta subunit, central domain
A	PF02768	DNA_pol3_beta_3	DNA polymerase III beta subunit, C-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.150.10	Alpha Beta	Roll	DNA Polymerase III; Chain A, domain 2	DNA Polymerase III, subunit A, domain 2	4k3oA02
3.10.150.10	Alpha Beta	Roll	DNA Polymerase III; Chain A, domain 2	DNA Polymerase III, subunit A, domain 2	4k3oA03
3.10.150.10	Alpha Beta	Roll	DNA Polymerase III; Chain A, domain 2	DNA Polymerase III, subunit A, domain 2	4k3oA01

4K3LA 2XURA 3PGEB 4K3SA 4K3OA 4K74A 4N95A 5AH4A 4MJQA 4TR6A 4N99A 4OVFA 3QSBB 4RKIA 5AGUA 4OVGA 3L0WA 4MJPA 4PNVA 3T0PA 1MMIA 4K3KA 4MJRA 4PNWA 3Q4JA 1JQJA 1UNNA 4TR8A 3D1FA 4PNUA 4TRTA 4OVHA 1JQLA 4N96A 4N9AA 4S3IA 2AVTA 2AWAA 3D1EA 4K3PA 4N98A 4TSZA 4K3RA 3BEPA 5FRQA 3D1GA 2POLA 4N97A 4K3MA 1OK7A 3F1VA 3L10A 4TR7A 5AH2A 5AGVA 3P16A 4N94A 4K3QA 3PWEA 5FVEA 3QSBA 1VPKA 3L0XA 3Q4KA 3Q4LA 3RB9A
chains in the Genus database with same CATH superfamily

4K3LA 2XURA 3PGEB 4K3SA 3L10B 4K3OA 4K74A 4N95A 5AH4A 4MJQA 4TR6A 4N99A 4OVFA 3QSBB 4RKIA 3L0XB 5AGUA 4OVGA 3L0WA 4MJPA 4PNVA 3T0PA 1MMIA 4K3KA 4MJRA 4PNWA 3Q4JA 1JQJA 1UNNA 4TR8A 3D1FA 4PNUA 4TRTA 4OVHA 1JQLA 4N96A 4N9AA 4S3IA 2AVTA 2AWAA 3D1EA 3L0WB 4K3PA 4N98A 4K3RA 4TSZA 3BEPA 5FRQA 3D1GA 2POLA 3PGEA 4K3MA 1OK7A 3F1VA 3L10A 4N97A 4TR7A 5AH2A 5AGVA 3P16A 4N94A 4K3QA 3PWEA 5FVEA 3QSBA 1VPKA 3L0XA 3Q4KA 3Q4LA 3RB9A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4K3L A;  2XUR A;  3PGE B;  4K3S A;  4K3O A;  4K74 A;  4N95 A;  5AH4 A;  4MJQ A;  4TR6 A;  4N99 A;  4OVF A;  3QSB B;  4RKI A;  5AGU A;  4OVG A;  3L0W A;  4MJP A;  4PNV A;  3T0P A;  1MMI A;  4K3K A;  4MJR A;  4PNW A;  3Q4J A;  1JQJ A;  1UNN A;  4TR8 A;  3D1F A;  4PNU A;  4TRT A;  4OVH A;  1JQL A;  4N96 A;  4N9A A;  4S3I A;  2AVT A;  2AWA A;  3D1E A;  4K3P A;  4N98 A;  4TSZ A;  4K3R A;  3BEP A;  5FRQ A;  3D1G A;  2POL A;  4N97 A;  4K3M A;  1OK7 A;  3F1V A;  3L10 A;  4TR7 A;  5AH2 A;  5AGV A;  3P16 A;  4N94 A;  4K3Q A;  3PWE A;  5FVE A;  3QSB A;  1VPK A;  3L0X A;  3Q4K A;  3Q4L A;  3RB9 A; 
#chains in the Genus database with same CATH topology
 4K3L A;  2XUR A;  3PGE B;  4K3S A;  3L10 B;  4K3O A;  4K74 A;  4N95 A;  5AH4 A;  4MJQ A;  4TR6 A;  4N99 A;  4OVF A;  3QSB B;  4RKI A;  3L0X B;  5AGU A;  4OVG A;  3L0W A;  4MJP A;  4PNV A;  3T0P A;  1MMI A;  4K3K A;  4MJR A;  4PNW A;  3Q4J A;  1JQJ A;  1UNN A;  4TR8 A;  3D1F A;  4PNU A;  4TRT A;  4OVH A;  1JQL A;  4N96 A;  4N9A A;  4S3I A;  2AVT A;  2AWA A;  3D1E A;  3L0W B;  4K3P A;  4N98 A;  4K3R A;  4TSZ A;  3BEP A;  5FRQ A;  3D1G A;  2POL A;  3PGE A;  4K3M A;  1OK7 A;  3F1V A;  3L10 A;  4N97 A;  4TR7 A;  5AH2 A;  5AGV A;  3P16 A;  4N94 A;  4K3Q A;  3PWE A;  5FVE A;  3QSB A;  1VPK A;  3L0X A;  3Q4K A;  3Q4L A;  3RB9 A; 
#chains in the Genus database with same CATH homology
 4K3L A;  2XUR A;  3PGE B;  4K3S A;  4K3O A;  4K74 A;  4N95 A;  5AH4 A;  4MJQ A;  4TR6 A;  4N99 A;  4OVF A;  3QSB B;  4RKI A;  5AGU A;  4OVG A;  3L0W A;  4MJP A;  4PNV A;  3T0P A;  1MMI A;  4K3K A;  4MJR A;  4PNW A;  3Q4J A;  1JQJ A;  1UNN A;  4TR8 A;  3D1F A;  4PNU A;  4TRT A;  4OVH A;  1JQL A;  4N96 A;  4N9A A;  4S3I A;  2AVT A;  2AWA A;  3D1E A;  4K3P A;  4N98 A;  4TSZ A;  4K3R A;  3BEP A;  5FRQ A;  3D1G A;  2POL A;  4N97 A;  4K3M A;  1OK7 A;  3F1V A;  3L10 A;  4TR7 A;  5AH2 A;  5AGV A;  3P16 A;  4N94 A;  4K3Q A;  3PWE A;  5FVE A;  3QSB A;  1VPK A;  3L0X A;  3Q4K A;  3Q4L A;  3RB9 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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4K3OA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations