4LS4A

Crystal structure of l66s mutant toxin from helicobacter pylori
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
90
structure length
90
Chain Sequence
SHMLKLNLKKSFQKDFDKLLLNGFDDSVLNEVILTLRKKEPLDPQFQDHALKGKWKPFRECHIKPDVSLVYLVKDDELILLRLGSHSELF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of apo and copper bound HP0894 toxin from Helicobacter pylori 26695 and insight into mRNase activity
pubmed doi rcsb
molecule tags Toxin
source organism Helicobacter pylori
molecule keywords Uncharacterized protein, Toxin
total genus 26
structure length 90
sequence length 90
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-07-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05016 ParE_toxin ParE toxin of type II toxin-antitoxin system, parDE
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2310.20 Alpha Beta 2-Layer Sandwich YaeB-like fold RelE-like 4ls4A00
5CZEB 4ML2A 5IWHA 4PX8A 4MMJA 5CW7B 1Z8MA 1WMIA 2KC9A 4ML0B 4MCXB 4YY3Y 4FXHA 2A6SA 2KC8A 2OTRA 4LTTA 3BPQB 2A6RA 5CEGB 4LS4A 4LSYA 4NRNA 5IXLA 4MCTB 3KXEA 2A6QE 5CZFC 4FXIA 4Q2UB 2KHEA 3OEIC 3G5OB 4FXED 4MMGA
chains in the Genus database with same CATH superfamily
5CZEB 4ML2A 5IWHA 4PX8A 4MMJA 5CW7B 2DFXE 2A8KA 1Z8MA 2DJHA 1WMIA 2KC9A 1XQBA 4ML0B 3AO9A 4MCXB 2PD0A 4YY3Y 4FXHA 3HI2B 2A6SA 2KC8A 2OTRA 4LTTA 3BPQB 2A6RA 5CEGB 4FBDA 4LS4A 4LSYA 4NRNA 5IXLA 4MCTB 3KXEA 2A6QE 5CZFC 2FHZB 4FXIA 4Q2UB 2KHEA 3OEIC 3G5OB 4FXED 4MMGA 3VJ7A
chains in the Genus database with same CATH topology
5CZEB 4ML2A 5IWHA 4PX8A 4MMJA 5CW7B 1Z8MA 1WMIA 2KC9A 4ML0B 4MCXB 4YY3Y 4FXHA 2A6SA 2KC8A 2OTRA 4LTTA 3BPQB 2A6RA 5CEGB 4LS4A 4LSYA 4NRNA 5IXLA 4MCTB 3KXEA 2A6QE 5CZFC 4FXIA 4Q2UB 2KHEA 3OEIC 3G5OB 4FXED 4MMGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5CZE B;  4ML2 A;  5IWH A;  4PX8 A;  4MMJ A;  5CW7 B;  1Z8M A;  1WMI A;  2KC9 A;  4ML0 B;  4MCX B;  4YY3 Y;  4FXH A;  2A6S A;  2KC8 A;  2OTR A;  4LTT A;  3BPQ B;  2A6R A;  5CEG B;  4LS4 A;  4LSY A;  4NRN A;  5IXL A;  4MCT B;  3KXE A;  2A6Q E;  5CZF C;  4FXI A;  4Q2U B;  2KHE A;  3OEI C;  3G5O B;  4FXE D;  4MMG A; 
#chains in the Genus database with same CATH topology
 5CZE B;  4ML2 A;  5IWH A;  4PX8 A;  4MMJ A;  5CW7 B;  2DFX E;  2A8K A;  1Z8M A;  2DJH A;  1WMI A;  2KC9 A;  1XQB A;  4ML0 B;  3AO9 A;  4MCX B;  2PD0 A;  4YY3 Y;  4FXH A;  3HI2 B;  2A6S A;  2KC8 A;  2OTR A;  4LTT A;  3BPQ B;  2A6R A;  5CEG B;  4FBD A;  4LS4 A;  4LSY A;  4NRN A;  5IXL A;  4MCT B;  3KXE A;  2A6Q E;  5CZF C;  2FHZ B;  4FXI A;  4Q2U B;  2KHE A;  3OEI C;  3G5O B;  4FXE D;  4MMG A;  3VJ7 A; 
#chains in the Genus database with same CATH homology
 5CZE B;  4ML2 A;  5IWH A;  4PX8 A;  4MMJ A;  5CW7 B;  1Z8M A;  1WMI A;  2KC9 A;  4ML0 B;  4MCX B;  4YY3 Y;  4FXH A;  2A6S A;  2KC8 A;  2OTR A;  4LTT A;  3BPQ B;  2A6R A;  5CEG B;  4LS4 A;  4LSY A;  4NRN A;  5IXL A;  4MCT B;  3KXE A;  2A6Q E;  5CZF C;  4FXI A;  4Q2U B;  2KHE A;  3OEI C;  3G5O B;  4FXE D;  4MMG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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