4LSY | Genus

Total Genus 26

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	26
sequence length	88
structure length	88
Chain Sequence	MLKLNLKKSFQKDFDKLLLNGFDDSVLNEVILTLRKKEPLDPQFQDHALKGKWKPFRECHIKPDVSLVYLVKDDELILLRLGSHSELF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal structure of apo and copper bound HP0894 toxin from Helicobacter pylori 26695 and insight into mRNase activity pubmed doi rcsb
molecule keywords	Uncharacterized protein, Toxin
molecule tags	Toxin
source organism	Helicobacter pylori
total genus	26
structure length	88
sequence length	88
chains with identical sequence	B
ec nomenclature
pdb deposition date	2013-07-23

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF05016	ParE_toxin	ParE toxin of type II toxin-antitoxin system, parDE

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.2310.20	Alpha Beta	2-Layer Sandwich	YaeB-like fold	RelE-like	4lsyA00

5IWHA 4NRNA 4PX8A 4ML0B 2OTRA 5CEGB 4YY3Y 3KXEA 2KC8A 1WMIA 5CZEB 4LSYA 2KC9A 4MCXB 2KHEA 2A6QE 4Q2UB 4LTTA 4FXHA 4MMGA 3BPQB 2A6SA 4MMJA 4LS4A 4ML2A 4FXED 2A6RA 3G5OB 5CZFC 5IXLA 4FXIA 1Z8MA 3OEIC 5CW7B 4MCTB
chains in the Genus database with same CATH superfamily

5IWHA 4NRNA 4PX8A 4ML0B 2OTRA 5CEGB 4YY3Y 3KXEA 2KC8A 2PD0A 1WMIA 2DFXE 3AO9A 5CZEB 2DJHA 4LSYA 4FBDA 2KC9A 4MCXB 2KHEA 2A6QE 3HI2B 3VJ7A 4Q2UB 4LTTA 2A8KA 4FXHA 4MMGA 3BPQB 2A6SA 4MMJA 4LS4A 4ML2A 4FXED 2A6RA 3G5OB 5CZFC 2FHZB 1XQBA 5IXLA 4FXIA 1Z8MA 3OEIC 5CW7B 4MCTB
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5IWH A;  4NRN A;  4PX8 A;  4ML0 B;  2OTR A;  5CEG B;  4YY3 Y;  3KXE A;  2KC8 A;  1WMI A;  5CZE B;  4LSY A;  2KC9 A;  4MCX B;  2KHE A;  2A6Q E;  4Q2U B;  4LTT A;  4FXH A;  4MMG A;  3BPQ B;  2A6S A;  4MMJ A;  4LS4 A;  4ML2 A;  4FXE D;  2A6R A;  3G5O B;  5CZF C;  5IXL A;  4FXI A;  1Z8M A;  3OEI C;  5CW7 B;  4MCT B; 
#chains in the Genus database with same CATH topology
 5IWH A;  4NRN A;  4PX8 A;  4ML0 B;  2OTR A;  5CEG B;  4YY3 Y;  3KXE A;  2KC8 A;  2PD0 A;  1WMI A;  2DFX E;  3AO9 A;  5CZE B;  2DJH A;  4LSY A;  4FBD A;  2KC9 A;  4MCX B;  2KHE A;  2A6Q E;  3HI2 B;  3VJ7 A;  4Q2U B;  4LTT A;  2A8K A;  4FXH A;  4MMG A;  3BPQ B;  2A6S A;  4MMJ A;  4LS4 A;  4ML2 A;  4FXE D;  2A6R A;  3G5O B;  5CZF C;  2FHZ B;  1XQB A;  5IXL A;  4FXI A;  1Z8M A;  3OEI C;  5CW7 B;  4MCT B; 
#chains in the Genus database with same CATH homology
 5IWH A;  4NRN A;  4PX8 A;  4ML0 B;  2OTR A;  5CEG B;  4YY3 Y;  3KXE A;  2KC8 A;  1WMI A;  5CZE B;  4LSY A;  2KC9 A;  4MCX B;  2KHE A;  2A6Q E;  4Q2U B;  4LTT A;  4FXH A;  4MMG A;  3BPQ B;  2A6S A;  4MMJ A;  4LS4 A;  4ML2 A;  4FXE D;  2A6R A;  3G5O B;  5CZF C;  5IXL A;  4FXI A;  1Z8M A;  3OEI C;  5CW7 B;  4MCT B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4LSYA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations