4ML0 | Genus

Total Genus 31

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	31
sequence length	90
structure length	90
Chain Sequence	QRDIEYSGQFSKDVKLAQKRHKDMNKLKYLMTLLINNTLPLPAVYKDHPLQSSWKGYRDAHVEPDWILIYKLTDKLLRFERTGTHAALFG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 90 atoms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Structural and Functional Characterization of Escherichia coli Toxin-Antitoxin Complex DinJ-YafQ pubmed doi rcsb
molecule keywords	Predicted antitoxin of YafQ-DinJ toxin-antitoxin system
molecule tags	Toxin/antitoxin
source organism	Escherichia coli
total genus	31
structure length	90
sequence length	90
chains with identical sequence	D, F, H, J, L, N, P
ec nomenclature
pdb deposition date	2013-09-06

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.2310.20	Alpha Beta	2-Layer Sandwich	YaeB-like fold	RelE-like	4ml0B00

1WMIA 2A6SA 4ML2A 5CW7B 4MMJA 5CZFC 4MCXB 4FXIA 3OEIC 5IXLA 4YY3Y 2KC9A 3BPQB 4FXHA 5CZEB 2OTRA 3G5OB 5IWHA 4NRNA 2A6QE 4MCTB 3KXEA 4LS4A 4FXED 4MMGA 1Z8MA 2A6RA 4PX8A 4LSYA 4LTTA 4Q2UB 2KHEA 2KC8A 4ML0B 5CEGB
chains in the Genus database with same CATH superfamily

1WMIA 2A6SA 2PD0A 4ML2A 5CW7B 4MMJA 5CZFC 4MCXB 4FXIA 3OEIC 5IXLA 4YY3Y 2KC9A 3BPQB 3VJ7A 4FXHA 5CZEB 2DFXE 4FBDA 2A8KA 2OTRA 3G5OB 5IWHA 2DJHA 4NRNA 2A6QE 4MCTB 3KXEA 4LS4A 4FXED 4MMGA 1Z8MA 2A6RA 4PX8A 3AO9A 4LSYA 4LTTA 1XQBA 2FHZB 2KHEA 4Q2UB 2KC8A 3HI2B 4ML0B 5CEGB
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1WMI A;  2A6S A;  4ML2 A;  5CW7 B;  4MMJ A;  5CZF C;  4MCX B;  4FXI A;  3OEI C;  5IXL A;  4YY3 Y;  2KC9 A;  3BPQ B;  4FXH A;  5CZE B;  2OTR A;  3G5O B;  5IWH A;  4NRN A;  2A6Q E;  4MCT B;  3KXE A;  4LS4 A;  4FXE D;  4MMG A;  1Z8M A;  2A6R A;  4PX8 A;  4LSY A;  4LTT A;  4Q2U B;  2KHE A;  2KC8 A;  4ML0 B;  5CEG B; 
#chains in the Genus database with same CATH topology
 1WMI A;  2A6S A;  2PD0 A;  4ML2 A;  5CW7 B;  4MMJ A;  5CZF C;  4MCX B;  4FXI A;  3OEI C;  5IXL A;  4YY3 Y;  2KC9 A;  3BPQ B;  3VJ7 A;  4FXH A;  5CZE B;  2DFX E;  4FBD A;  2A8K A;  2OTR A;  3G5O B;  5IWH A;  2DJH A;  4NRN A;  2A6Q E;  4MCT B;  3KXE A;  4LS4 A;  4FXE D;  4MMG A;  1Z8M A;  2A6R A;  4PX8 A;  3AO9 A;  4LSY A;  4LTT A;  1XQB A;  2FHZ B;  2KHE A;  4Q2U B;  2KC8 A;  3HI2 B;  4ML0 B;  5CEG B; 
#chains in the Genus database with same CATH homology
 1WMI A;  2A6S A;  4ML2 A;  5CW7 B;  4MMJ A;  5CZF C;  4MCX B;  4FXI A;  3OEI C;  5IXL A;  4YY3 Y;  2KC9 A;  3BPQ B;  4FXH A;  5CZE B;  2OTR A;  3G5O B;  5IWH A;  4NRN A;  2A6Q E;  4MCT B;  3KXE A;  4LS4 A;  4FXE D;  4MMG A;  1Z8M A;  2A6R A;  4PX8 A;  4LSY A;  4LTT A;  4Q2U B;  2KHE A;  2KC8 A;  4ML0 B;  5CEG B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4ML0B

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN