4OVH | Genus

Total Genus 89

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	89
sequence length	364
structure length	362
Chain Sequence	MKFTVEREHLLKPLQQVSGPLGGRLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPM

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 362 atoms

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362 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase/transferase inhibitor
source organism	Escherichia coli
publication title	Bacterial Sliding Clamp Inhibitors that Mimic the Sequential Binding Mechanism of Endogenous Linear Motifs. pubmed doi rcsb
molecule keywords	DNA polymerase III subunit beta
total genus	89
structure length	362
sequence length	364
chains with identical sequence	B
ec nomenclature	ec 2.7.7.7: DNA-directed DNA polymerase.
pdb deposition date	2014-02-21

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.150.10	Alpha Beta	Roll	DNA Polymerase III; Chain A, domain 2	DNA Polymerase III, subunit A, domain 2	4ovhA02
3.10.150.10	Alpha Beta	Roll	DNA Polymerase III; Chain A, domain 2	DNA Polymerase III, subunit A, domain 2	4ovhA03
3.10.150.10	Alpha Beta	Roll	DNA Polymerase III; Chain A, domain 2	DNA Polymerase III, subunit A, domain 2	4ovhA01

4TRTA 3Q4LA 4RKIA 4TR8A 5FVEA 3L10A 2AWAA 3D1EA 4TSZA 4N94A 1VPKA 3BEPA 4K3PA 4OVGA 5AH4A 1JQJA 5FRQA 4K74A 1JQLA 3PWEA 3L0WA 3T0PA 4K3LA 2POLA 3RB9A 1OK7A 3PGEB 4N95A 5AGUA 3Q4KA 4N96A 5AH2A 4TR6A 4K3QA 4OVHA 5AGVA 2AVTA 3L0XA 3P16A 1UNNA 4N98A 3QSBA 4OVFA 4PNVA 3F1VA 4K3RA 4N99A 4K3KA 4TR7A 4PNWA 4K3MA 3QSBB 4MJRA 4MJQA 4K3OA 4S3IA 4K3SA 3D1FA 4MJPA 4PNUA 4N97A 1MMIA 2XURA 3D1GA 3Q4JA 4N9AA
chains in the Genus database with same CATH superfamily

4TRTA 3Q4LA 4RKIA 4TR8A 5FVEA 3L10A 2AWAA 3D1EA 4TSZA 4N94A 1VPKA 3BEPA 4K3PA 4OVGA 5AH4A 3L10B 1JQJA 5FRQA 4K74A 3PGEA 1JQLA 3PWEA 3L0WA 3T0PA 4K3LA 2POLA 3RB9A 1OK7A 3PGEB 3L0WB 4N95A 5AGUA 3Q4KA 4N96A 5AH2A 4TR6A 4K3QA 4OVHA 5AGVA 2AVTA 3L0XA 3P16A 1UNNA 4N98A 3QSBA 4OVFA 4PNVA 3F1VA 4K3RA 4N99A 4K3KA 4TR7A 3L0XB 4PNWA 4K3MA 3QSBB 4MJRA 4MJQA 4K3OA 4S3IA 4K3SA 3D1FA 4MJPA 4PNUA 4N97A 1MMIA 2XURA 3D1GA 3Q4JA 4N9AA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4TRT A;  3Q4L A;  4RKI A;  4TR8 A;  5FVE A;  3L10 A;  2AWA A;  3D1E A;  4TSZ A;  4N94 A;  1VPK A;  3BEP A;  4K3P A;  4OVG A;  5AH4 A;  1JQJ A;  5FRQ A;  4K74 A;  1JQL A;  3PWE A;  3L0W A;  3T0P A;  4K3L A;  2POL A;  3RB9 A;  1OK7 A;  3PGE B;  4N95 A;  5AGU A;  3Q4K A;  4N96 A;  5AH2 A;  4TR6 A;  4K3Q A;  4OVH A;  5AGV A;  2AVT A;  3L0X A;  3P16 A;  1UNN A;  4N98 A;  3QSB A;  4OVF A;  4PNV A;  3F1V A;  4K3R A;  4N99 A;  4K3K A;  4TR7 A;  4PNW A;  4K3M A;  3QSB B;  4MJR A;  4MJQ A;  4K3O A;  4S3I A;  4K3S A;  3D1F A;  4MJP A;  4PNU A;  4N97 A;  1MMI A;  2XUR A;  3D1G A;  3Q4J A;  4N9A A; 
#chains in the Genus database with same CATH topology
 4TRT A;  3Q4L A;  4RKI A;  4TR8 A;  5FVE A;  3L10 A;  2AWA A;  3D1E A;  4TSZ A;  4N94 A;  1VPK A;  3BEP A;  4K3P A;  4OVG A;  5AH4 A;  3L10 B;  1JQJ A;  5FRQ A;  4K74 A;  3PGE A;  1JQL A;  3PWE A;  3L0W A;  3T0P A;  4K3L A;  2POL A;  3RB9 A;  1OK7 A;  3PGE B;  3L0W B;  4N95 A;  5AGU A;  3Q4K A;  4N96 A;  5AH2 A;  4TR6 A;  4K3Q A;  4OVH A;  5AGV A;  2AVT A;  3L0X A;  3P16 A;  1UNN A;  4N98 A;  3QSB A;  4OVF A;  4PNV A;  3F1V A;  4K3R A;  4N99 A;  4K3K A;  4TR7 A;  3L0X B;  4PNW A;  4K3M A;  3QSB B;  4MJR A;  4MJQ A;  4K3O A;  4S3I A;  4K3S A;  3D1F A;  4MJP A;  4PNU A;  4N97 A;  1MMI A;  2XUR A;  3D1G A;  3Q4J A;  4N9A A; 
#chains in the Genus database with same CATH homology
 4TRT A;  3Q4L A;  4RKI A;  4TR8 A;  5FVE A;  3L10 A;  2AWA A;  3D1E A;  4TSZ A;  4N94 A;  1VPK A;  3BEP A;  4K3P A;  4OVG A;  5AH4 A;  1JQJ A;  5FRQ A;  4K74 A;  1JQL A;  3PWE A;  3L0W A;  3T0P A;  4K3L A;  2POL A;  3RB9 A;  1OK7 A;  3PGE B;  4N95 A;  5AGU A;  3Q4K A;  4N96 A;  5AH2 A;  4TR6 A;  4K3Q A;  4OVH A;  5AGV A;  2AVT A;  3L0X A;  3P16 A;  1UNN A;  4N98 A;  3QSB A;  4OVF A;  4PNV A;  3F1V A;  4K3R A;  4N99 A;  4K3K A;  4TR7 A;  4PNW A;  4K3M A;  3QSB B;  4MJR A;  4MJQ A;  4K3O A;  4S3I A;  4K3S A;  3D1F A;  4MJP A;  4PNU A;  4N97 A;  1MMI A;  2XUR A;  3D1G A;  3Q4J A;  4N9A A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4OVHA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN