4PNV | Genus

Total Genus 88

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	88
sequence length	366
structure length	366
Chain Sequence	MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 366 atoms

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366 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Escherichia coli
publication title	Bacterial Sliding Clamp Inhibitors that Mimic the Sequential Binding Mechanism of Endogenous Linear Motifs. pubmed doi rcsb
molecule keywords	DNA polymerase III subunit beta
total genus	88
structure length	366
sequence length	366
chains with identical sequence	B
ec nomenclature	ec 2.7.7.7: DNA-directed DNA polymerase.
pdb deposition date	2014-02-21

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.150.10	Alpha Beta	Roll	DNA Polymerase III; Chain A, domain 2	DNA Polymerase III, subunit A, domain 2	4pnvA02
3.10.150.10	Alpha Beta	Roll	DNA Polymerase III; Chain A, domain 2	DNA Polymerase III, subunit A, domain 2	4pnvA03
3.10.150.10	Alpha Beta	Roll	DNA Polymerase III; Chain A, domain 2	DNA Polymerase III, subunit A, domain 2	4pnvA01

3PGEB 3Q4LA 4N97A 2AVTA 3D1FA 3L0WA 4N94A 4RKIA 4N9AA 4OVFA 5FVEA 3F1VA 4MJQA 3PWEA 3D1GA 1OK7A 4N98A 4OVGA 4TR7A 1UNNA 4K3SA 1JQLA 3L10A 3QSBB 4N96A 4N95A 4MJPA 4K3PA 4TSZA 4TR8A 4N99A 3Q4JA 5AGVA 4PNWA 2POLA 5AH4A 4K3LA 3T0PA 1VPKA 4PNVA 3D1EA 5AGUA 4K3RA 4TR6A 3RB9A 4K3MA 3P16A 3Q4KA 4K3QA 3BEPA 2AWAA 4K3KA 4S3IA 3L0XA 5FRQA 4TRTA 5AH2A 4PNUA 3QSBA 4K74A 1MMIA 4MJRA 4K3OA 1JQJA 4OVHA 2XURA
chains in the Genus database with same CATH superfamily

3PGEB 3Q4LA 4N97A 2AVTA 3D1FA 3L0WA 4N94A 4RKIA 4N9AA 4OVFA 5FVEA 3F1VA 4MJQA 3L0XB 3PWEA 3D1GA 1OK7A 4N98A 4OVGA 4TR7A 1UNNA 4K3SA 1JQLA 3L10A 3QSBB 4N96A 4N95A 4MJPA 4K3PA 4TSZA 4TR8A 3L0WB 4N99A 3Q4JA 5AGVA 4PNWA 2POLA 5AH4A 4K3LA 3T0PA 1VPKA 4PNVA 3D1EA 5AGUA 4K3RA 4TR6A 3RB9A 3L10B 3PGEA 4K3MA 3P16A 3Q4KA 4K3QA 3BEPA 2AWAA 4K3KA 4S3IA 3L0XA 5FRQA 4TRTA 5AH2A 4PNUA 3QSBA 4K74A 1MMIA 4MJRA 4K3OA 1JQJA 4OVHA 2XURA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3PGE B;  3Q4L A;  4N97 A;  2AVT A;  3D1F A;  3L0W A;  4N94 A;  4RKI A;  4N9A A;  4OVF A;  5FVE A;  3F1V A;  4MJQ A;  3PWE A;  3D1G A;  1OK7 A;  4N98 A;  4OVG A;  4TR7 A;  1UNN A;  4K3S A;  1JQL A;  3L10 A;  3QSB B;  4N96 A;  4N95 A;  4MJP A;  4K3P A;  4TSZ A;  4TR8 A;  4N99 A;  3Q4J A;  5AGV A;  4PNW A;  2POL A;  5AH4 A;  4K3L A;  3T0P A;  1VPK A;  4PNV A;  3D1E A;  5AGU A;  4K3R A;  4TR6 A;  3RB9 A;  4K3M A;  3P16 A;  3Q4K A;  4K3Q A;  3BEP A;  2AWA A;  4K3K A;  4S3I A;  3L0X A;  5FRQ A;  4TRT A;  5AH2 A;  4PNU A;  3QSB A;  4K74 A;  1MMI A;  4MJR A;  4K3O A;  1JQJ A;  4OVH A;  2XUR A; 
#chains in the Genus database with same CATH topology
 3PGE B;  3Q4L A;  4N97 A;  2AVT A;  3D1F A;  3L0W A;  4N94 A;  4RKI A;  4N9A A;  4OVF A;  5FVE A;  3F1V A;  4MJQ A;  3L0X B;  3PWE A;  3D1G A;  1OK7 A;  4N98 A;  4OVG A;  4TR7 A;  1UNN A;  4K3S A;  1JQL A;  3L10 A;  3QSB B;  4N96 A;  4N95 A;  4MJP A;  4K3P A;  4TSZ A;  4TR8 A;  3L0W B;  4N99 A;  3Q4J A;  5AGV A;  4PNW A;  2POL A;  5AH4 A;  4K3L A;  3T0P A;  1VPK A;  4PNV A;  3D1E A;  5AGU A;  4K3R A;  4TR6 A;  3RB9 A;  3L10 B;  3PGE A;  4K3M A;  3P16 A;  3Q4K A;  4K3Q A;  3BEP A;  2AWA A;  4K3K A;  4S3I A;  3L0X A;  5FRQ A;  4TRT A;  5AH2 A;  4PNU A;  3QSB A;  4K74 A;  1MMI A;  4MJR A;  4K3O A;  1JQJ A;  4OVH A;  2XUR A; 
#chains in the Genus database with same CATH homology
 3PGE B;  3Q4L A;  4N97 A;  2AVT A;  3D1F A;  3L0W A;  4N94 A;  4RKI A;  4N9A A;  4OVF A;  5FVE A;  3F1V A;  4MJQ A;  3PWE A;  3D1G A;  1OK7 A;  4N98 A;  4OVG A;  4TR7 A;  1UNN A;  4K3S A;  1JQL A;  3L10 A;  3QSB B;  4N96 A;  4N95 A;  4MJP A;  4K3P A;  4TSZ A;  4TR8 A;  4N99 A;  3Q4J A;  5AGV A;  4PNW A;  2POL A;  5AH4 A;  4K3L A;  3T0P A;  1VPK A;  4PNV A;  3D1E A;  5AGU A;  4K3R A;  4TR6 A;  3RB9 A;  4K3M A;  3P16 A;  3Q4K A;  4K3Q A;  3BEP A;  2AWA A;  4K3K A;  4S3I A;  3L0X A;  5FRQ A;  4TRT A;  5AH2 A;  4PNU A;  3QSB A;  4K74 A;  1MMI A;  4MJR A;  4K3O A;  1JQJ A;  4OVH A;  2XUR A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4PNVA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN