4PNW | Genus

Total Genus 91

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	91
sequence length	364
structure length	364
Chain Sequence	MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPM

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 364 atoms

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364 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase/transferase inhibitor
source organism	Escherichia coli
publication title	Bacterial Sliding Clamp Inhibitors that Mimic the Sequential Binding Mechanism of Endogenous Linear Motifs. pubmed doi rcsb
molecule keywords	DNA polymerase III subunit beta
total genus	91
structure length	364
sequence length	364
chains with identical sequence	B
ec nomenclature	ec 2.7.7.7: DNA-directed DNA polymerase.
pdb deposition date	2014-02-21

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.150.10	Alpha Beta	Roll	DNA Polymerase III; Chain A, domain 2	DNA Polymerase III, subunit A, domain 2	4pnwA02
3.10.150.10	Alpha Beta	Roll	DNA Polymerase III; Chain A, domain 2	DNA Polymerase III, subunit A, domain 2	4pnwA03
3.10.150.10	Alpha Beta	Roll	DNA Polymerase III; Chain A, domain 2	DNA Polymerase III, subunit A, domain 2	4pnwA01

4K3QA 3D1EA 3BEPA 4K3MA 1UNNA 2XURA 4K3SA 5AGVA 2POLA 4TSZA 1OK7A 3L10A 3L0XA 4TR7A 3PGEB 4TRTA 3QSBB 4PNVA 4K74A 5FVEA 1MMIA 1VPKA 3D1GA 4N9AA 4N97A 4MJQA 4MJRA 3RB9A 4TR8A 3L0WA 3Q4LA 3PWEA 4N99A 4N96A 4TR6A 3F1VA 5FRQA 3P16A 3Q4KA 4K3RA 4OVFA 3QSBA 4S3IA 4OVGA 2AVTA 4K3OA 4OVHA 4N95A 4MJPA 5AH4A 2AWAA 4PNWA 4K3PA 3T0PA 5AGUA 3D1FA 4N98A 4PNUA 4RKIA 1JQJA 1JQLA 4N94A 4K3LA 4K3KA 5AH2A 3Q4JA
chains in the Genus database with same CATH superfamily

4K3QA 3D1EA 3BEPA 4K3MA 1UNNA 2XURA 4K3SA 5AGVA 2POLA 3L0WB 4TSZA 1OK7A 3L10A 3L0XA 4TR7A 3PGEB 4TRTA 3QSBB 4PNVA 4K74A 5FVEA 1MMIA 1VPKA 3D1GA 4N9AA 4N97A 4MJQA 4MJRA 3RB9A 4TR8A 3L0WA 3Q4LA 3PWEA 4N99A 4N96A 3PGEA 4TR6A 3F1VA 5FRQA 3P16A 3Q4KA 4K3RA 4OVFA 3QSBA 4S3IA 4OVGA 2AVTA 4K3OA 4OVHA 4N95A 5AH2A 4MJPA 5AH4A 4K3KA 2AWAA 4PNWA 4K3PA 3T0PA 5AGUA 3D1FA 4N98A 4PNUA 4RKIA 1JQJA 1JQLA 4N94A 4K3LA 3L10B 3L0XB 3Q4JA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4K3Q A;  3D1E A;  3BEP A;  4K3M A;  1UNN A;  2XUR A;  4K3S A;  5AGV A;  2POL A;  4TSZ A;  1OK7 A;  3L10 A;  3L0X A;  4TR7 A;  3PGE B;  4TRT A;  3QSB B;  4PNV A;  4K74 A;  5FVE A;  1MMI A;  1VPK A;  3D1G A;  4N9A A;  4N97 A;  4MJQ A;  4MJR A;  3RB9 A;  4TR8 A;  3L0W A;  3Q4L A;  3PWE A;  4N99 A;  4N96 A;  4TR6 A;  3F1V A;  5FRQ A;  3P16 A;  3Q4K A;  4K3R A;  4OVF A;  3QSB A;  4S3I A;  4OVG A;  2AVT A;  4K3O A;  4OVH A;  4N95 A;  4MJP A;  5AH4 A;  2AWA A;  4PNW A;  4K3P A;  3T0P A;  5AGU A;  3D1F A;  4N98 A;  4PNU A;  4RKI A;  1JQJ A;  1JQL A;  4N94 A;  4K3L A;  4K3K A;  5AH2 A;  3Q4J A; 
#chains in the Genus database with same CATH topology
 4K3Q A;  3D1E A;  3BEP A;  4K3M A;  1UNN A;  2XUR A;  4K3S A;  5AGV A;  2POL A;  3L0W B;  4TSZ A;  1OK7 A;  3L10 A;  3L0X A;  4TR7 A;  3PGE B;  4TRT A;  3QSB B;  4PNV A;  4K74 A;  5FVE A;  1MMI A;  1VPK A;  3D1G A;  4N9A A;  4N97 A;  4MJQ A;  4MJR A;  3RB9 A;  4TR8 A;  3L0W A;  3Q4L A;  3PWE A;  4N99 A;  4N96 A;  3PGE A;  4TR6 A;  3F1V A;  5FRQ A;  3P16 A;  3Q4K A;  4K3R A;  4OVF A;  3QSB A;  4S3I A;  4OVG A;  2AVT A;  4K3O A;  4OVH A;  4N95 A;  5AH2 A;  4MJP A;  5AH4 A;  4K3K A;  2AWA A;  4PNW A;  4K3P A;  3T0P A;  5AGU A;  3D1F A;  4N98 A;  4PNU A;  4RKI A;  1JQJ A;  1JQL A;  4N94 A;  4K3L A;  3L10 B;  3L0X B;  3Q4J A; 
#chains in the Genus database with same CATH homology
 4K3Q A;  3D1E A;  3BEP A;  4K3M A;  1UNN A;  2XUR A;  4K3S A;  5AGV A;  2POL A;  4TSZ A;  1OK7 A;  3L10 A;  3L0X A;  4TR7 A;  3PGE B;  4TRT A;  3QSB B;  4PNV A;  4K74 A;  5FVE A;  1MMI A;  1VPK A;  3D1G A;  4N9A A;  4N97 A;  4MJQ A;  4MJR A;  3RB9 A;  4TR8 A;  3L0W A;  3Q4L A;  3PWE A;  4N99 A;  4N96 A;  4TR6 A;  3F1V A;  5FRQ A;  3P16 A;  3Q4K A;  4K3R A;  4OVF A;  3QSB A;  4S3I A;  4OVG A;  2AVT A;  4K3O A;  4OVH A;  4N95 A;  4MJP A;  5AH4 A;  2AWA A;  4PNW A;  4K3P A;  3T0P A;  5AGU A;  3D1F A;  4N98 A;  4PNU A;  4RKI A;  1JQJ A;  1JQL A;  4N94 A;  4K3L A;  4K3K A;  5AH2 A;  3Q4J A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4PNWA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN