4PX8 | Genus

Total Genus 29

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	29
sequence length	99
structure length	99
Chain Sequence	GIKSFKHKGLKLLFEKGVTSGVPAQDVDRINDRLQAIDTATEIGELNRQIYKLHPLKGDREGYWSITVRANWRITFQFINGDAYILNYEDYHKLGPEQK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 99 atoms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Defining the mRNA recognition signature of a bacterial toxin protein. pubmed doi rcsb
molecule keywords	Killer protein
molecule tags	Toxin
source organism	Proteus vulgaris
total genus	29
structure length	99
sequence length	99
ec nomenclature
pdb deposition date	2014-03-22

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF05015	HigB-like_toxin	RelE-like toxin of type II toxin-antitoxin system HigB

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.2310.20	Alpha Beta	2-Layer Sandwich	YaeB-like fold	RelE-like	4px8A00

2OTRA 4FXED 2A6QE 3KXEA 4MCXB 4Q2UB 5IWHA 4PX8A 3BPQB 2KC8A 2KC9A 1WMIA 4FXIA 4LTTA 3G5OB 5CW7B 4ML0B 5CEGB 4LSYA 2A6RA 4LS4A 4ML2A 2KHEA 5IXLA 3OEIC 2A6SA 5CZFC 5CZEB 1Z8MA 4MMJA 4MCTB 4YY3Y 4MMGA 4NRNA 4FXHA
chains in the Genus database with same CATH superfamily

2OTRA 2A8KA 4FXED 3VJ7A 2A6QE 3KXEA 4MCXB 4Q2UB 2DJHA 2PD0A 4PX8A 5IWHA 3BPQB 2FHZB 2KC8A 2KC9A 1XQBA 3HI2B 1WMIA 4FXIA 4LTTA 3G5OB 5CW7B 4FBDA 4ML0B 5CEGB 4LSYA 2A6RA 4LS4A 4ML2A 2KHEA 5IXLA 3OEIC 3AO9A 2A6SA 5CZFC 2DFXE 5CZEB 1Z8MA 4MMJA 4MCTB 4YY3Y 4MMGA 4NRNA 4FXHA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2OTR A;  4FXE D;  2A6Q E;  3KXE A;  4MCX B;  4Q2U B;  5IWH A;  4PX8 A;  3BPQ B;  2KC8 A;  2KC9 A;  1WMI A;  4FXI A;  4LTT A;  3G5O B;  5CW7 B;  4ML0 B;  5CEG B;  4LSY A;  2A6R A;  4LS4 A;  4ML2 A;  2KHE A;  5IXL A;  3OEI C;  2A6S A;  5CZF C;  5CZE B;  1Z8M A;  4MMJ A;  4MCT B;  4YY3 Y;  4MMG A;  4NRN A;  4FXH A; 
#chains in the Genus database with same CATH topology
 2OTR A;  2A8K A;  4FXE D;  3VJ7 A;  2A6Q E;  3KXE A;  4MCX B;  4Q2U B;  2DJH A;  2PD0 A;  4PX8 A;  5IWH A;  3BPQ B;  2FHZ B;  2KC8 A;  2KC9 A;  1XQB A;  3HI2 B;  1WMI A;  4FXI A;  4LTT A;  3G5O B;  5CW7 B;  4FBD A;  4ML0 B;  5CEG B;  4LSY A;  2A6R A;  4LS4 A;  4ML2 A;  2KHE A;  5IXL A;  3OEI C;  3AO9 A;  2A6S A;  5CZF C;  2DFX E;  5CZE B;  1Z8M A;  4MMJ A;  4MCT B;  4YY3 Y;  4MMG A;  4NRN A;  4FXH A; 
#chains in the Genus database with same CATH homology
 2OTR A;  4FXE D;  2A6Q E;  3KXE A;  4MCX B;  4Q2U B;  5IWH A;  4PX8 A;  3BPQ B;  2KC8 A;  2KC9 A;  1WMI A;  4FXI A;  4LTT A;  3G5O B;  5CW7 B;  4ML0 B;  5CEG B;  4LSY A;  2A6R A;  4LS4 A;  4ML2 A;  2KHE A;  5IXL A;  3OEI C;  2A6S A;  5CZF C;  5CZE B;  1Z8M A;  4MMJ A;  4MCT B;  4YY3 Y;  4MMG A;  4NRN A;  4FXH A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4PX8A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations