4TSZA

Crystal structure of dna polymerase sliding clamp from pseudomonas aeruginosa with ligand
Total Genus 95
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
95
sequence length
368
structure length
363
Chain Sequence
HMHFTIQREALLKPLQLVAGVVEQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLEDAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQKLLVKAGRSRFTLSTLPANDFPEGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAMCSLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTSKLVDGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQANNPEQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSALVHEADNDDSAYVVMPMRL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
source organism Pseudomonas aeruginosa
publication title Differential Modes of Peptide Binding onto Replicative Sliding Clamps from Various Bacterial Origins.
pubmed doi rcsb
molecule keywords DNA polymerase III subunit beta
total genus 95
structure length 363
sequence length 368
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
ec nomenclature ec 2.7.7.7: DNA-directed DNA polymerase.
pdb deposition date 2014-06-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00712 DNA_pol3_beta DNA polymerase III beta subunit, N-terminal domain
A PF02767 DNA_pol3_beta_2 DNA polymerase III beta subunit, central domain
A PF02768 DNA_pol3_beta_3 DNA polymerase III beta subunit, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.150.10 Alpha Beta Roll DNA Polymerase III; Chain A, domain 2 DNA Polymerase III, subunit A, domain 2 4tszA02
3.10.150.10 Alpha Beta Roll DNA Polymerase III; Chain A, domain 2 DNA Polymerase III, subunit A, domain 2 4tszA03
3.10.150.10 Alpha Beta Roll DNA Polymerase III; Chain A, domain 2 DNA Polymerase III, subunit A, domain 2 4tszA01
4TR7A 3Q4JA 3L10A 1OK7A 3L0WA 4TR8A 2XURA 4N99A 3D1EA 4K3MA 4TRTA 4K3RA 4N95A 4OVFA 5AGVA 1MMIA 4N98A 3BEPA 4N96A 5AGUA 4TR6A 1JQLA 4K3OA 2AVTA 3QSBA 1JQJA 1VPKA 4K74A 4S3IA 4TSZA 4RKIA 3QSBB 5AH2A 2POLA 5FVEA 4K3SA 4MJPA 4K3LA 4OVGA 5FRQA 3D1FA 4PNUA 4MJRA 4K3KA 3PWEA 4PNWA 3RB9A 2AWAA 4N94A 4N97A 3L0XA 4OVHA 3T0PA 3F1VA 3D1GA 4K3QA 4MJQA 3Q4KA 4K3PA 5AH4A 1UNNA 3P16A 3Q4LA 4N9AA 4PNVA 3PGEB
chains in the Genus database with same CATH superfamily
4TR7A 3Q4JA 3PGEB 3L10A 1OK7A 3L0WA 4TR8A 2XURA 4N99A 3L10B 3D1EA 3L0WB 4K3MA 4TRTA 4K3RA 4N95A 4OVFA 5AGVA 1MMIA 4N98A 3BEPA 4N96A 5AGUA 4TR6A 1JQLA 4K3OA 2AVTA 3QSBA 1JQJA 1VPKA 4K74A 4S3IA 4TSZA 4RKIA 3QSBB 5AH2A 2POLA 5FVEA 4K3SA 4MJPA 4K3LA 4OVGA 5FRQA 3D1FA 4PNUA 4MJRA 4K3KA 3PWEA 4PNWA 3RB9A 2AWAA 4N94A 4N97A 3L0XA 4OVHA 3T0PA 3L0XB 3PGEA 3D1GA 4K3QA 4MJQA 3Q4KA 4K3PA 5AH4A 1UNNA 3P16A 3Q4LA 4N9AA 4PNVA 3F1VA
chains in the Genus database with same CATH topology
4TR7A 3Q4JA 3L10A 1OK7A 3L0WA 4TR8A 2XURA 4N99A 3D1EA 4K3MA 4TRTA 4K3RA 4N95A 4OVFA 5AGVA 1MMIA 4N98A 3BEPA 4N96A 5AGUA 4TR6A 1JQLA 4K3OA 2AVTA 3QSBA 1JQJA 1VPKA 4K74A 4S3IA 4TSZA 4RKIA 3QSBB 5AH2A 2POLA 5FVEA 4K3SA 4MJPA 4K3LA 4OVGA 5FRQA 3D1FA 4PNUA 4MJRA 4K3KA 3PWEA 4PNWA 3RB9A 2AWAA 4N94A 4N97A 3L0XA 4OVHA 3T0PA 3F1VA 3D1GA 4K3QA 4MJQA 3Q4KA 4K3PA 5AH4A 1UNNA 3P16A 3Q4LA 4N9AA 4PNVA 3PGEB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4TR7 A;  3Q4J A;  3L10 A;  1OK7 A;  3L0W A;  4TR8 A;  2XUR A;  4N99 A;  3D1E A;  4K3M A;  4TRT A;  4K3R A;  4N95 A;  4OVF A;  5AGV A;  1MMI A;  4N98 A;  3BEP A;  4N96 A;  5AGU A;  4TR6 A;  1JQL A;  4K3O A;  2AVT A;  3QSB A;  1JQJ A;  1VPK A;  4K74 A;  4S3I A;  4TSZ A;  4RKI A;  3QSB B;  5AH2 A;  2POL A;  5FVE A;  4K3S A;  4MJP A;  4K3L A;  4OVG A;  5FRQ A;  3D1F A;  4PNU A;  4MJR A;  4K3K A;  3PWE A;  4PNW A;  3RB9 A;  2AWA A;  4N94 A;  4N97 A;  3L0X A;  4OVH A;  3T0P A;  3F1V A;  3D1G A;  4K3Q A;  4MJQ A;  3Q4K A;  4K3P A;  5AH4 A;  1UNN A;  3P16 A;  3Q4L A;  4N9A A;  4PNV A;  3PGE B; 
#chains in the Genus database with same CATH topology
 4TR7 A;  3Q4J A;  3PGE B;  3L10 A;  1OK7 A;  3L0W A;  4TR8 A;  2XUR A;  4N99 A;  3L10 B;  3D1E A;  3L0W B;  4K3M A;  4TRT A;  4K3R A;  4N95 A;  4OVF A;  5AGV A;  1MMI A;  4N98 A;  3BEP A;  4N96 A;  5AGU A;  4TR6 A;  1JQL A;  4K3O A;  2AVT A;  3QSB A;  1JQJ A;  1VPK A;  4K74 A;  4S3I A;  4TSZ A;  4RKI A;  3QSB B;  5AH2 A;  2POL A;  5FVE A;  4K3S A;  4MJP A;  4K3L A;  4OVG A;  5FRQ A;  3D1F A;  4PNU A;  4MJR A;  4K3K A;  3PWE A;  4PNW A;  3RB9 A;  2AWA A;  4N94 A;  4N97 A;  3L0X A;  4OVH A;  3T0P A;  3L0X B;  3PGE A;  3D1G A;  4K3Q A;  4MJQ A;  3Q4K A;  4K3P A;  5AH4 A;  1UNN A;  3P16 A;  3Q4L A;  4N9A A;  4PNV A;  3F1V A; 
#chains in the Genus database with same CATH homology
 4TR7 A;  3Q4J A;  3L10 A;  1OK7 A;  3L0W A;  4TR8 A;  2XUR A;  4N99 A;  3D1E A;  4K3M A;  4TRT A;  4K3R A;  4N95 A;  4OVF A;  5AGV A;  1MMI A;  4N98 A;  3BEP A;  4N96 A;  5AGU A;  4TR6 A;  1JQL A;  4K3O A;  2AVT A;  3QSB A;  1JQJ A;  1VPK A;  4K74 A;  4S3I A;  4TSZ A;  4RKI A;  3QSB B;  5AH2 A;  2POL A;  5FVE A;  4K3S A;  4MJP A;  4K3L A;  4OVG A;  5FRQ A;  3D1F A;  4PNU A;  4MJR A;  4K3K A;  3PWE A;  4PNW A;  3RB9 A;  2AWA A;  4N94 A;  4N97 A;  3L0X A;  4OVH A;  3T0P A;  3F1V A;  3D1G A;  4K3Q A;  4MJQ A;  3Q4K A;  4K3P A;  5AH4 A;  1UNN A;  3P16 A;  3Q4L A;  4N9A A;  4PNV A;  3PGE B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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