4YY3 | Genus

Total Genus 21

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	21
sequence length	92
structure length	92
Chain Sequence	GIKSFKHKGLKLLFEKGVTSGVPAQDVDRINDRLQAIDTATEIGELNRQIYKLHPLKGDREGYWSITVRANWRITFQFINGDAYILNYEDYH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	mRNA bound to the 30S subunit is a HigB toxin substrate. pubmed doi rcsb
molecule keywords	16S rRNA
molecule tags	Ribosome
source organism	Proteus vulgaris
total genus	21
structure length	92
sequence length	92
ec nomenclature
pdb deposition date	2015-03-23

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
Y	PF05015	HigB-like_toxin	RelE-like toxin of type II toxin-antitoxin system HigB

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.2310.20	Alpha Beta	2-Layer Sandwich	YaeB-like fold	RelE-like	4yy3Y00

2KC9A 4LSYA 5CZEB 4MCXB 3KXEA 2A6SA 5CZFC 4PX8A 5CW7B 4MMGA 1WMIA 4LS4A 4NRNA 5CEGB 3BPQB 4FXED 4LTTA 2OTRA 2A6RA 2KC8A 5IWHA 4FXIA 4MCTB 4Q2UB 2A6QE 5IXLA 4YY3Y 4MMJA 3G5OB 4ML2A 4FXHA 4ML0B 1Z8MA 2KHEA 3OEIC
chains in the Genus database with same CATH superfamily

1XQBA 2KC9A 4LSYA 5CZEB 4MCXB 4FBDA 3KXEA 2A6SA 2PD0A 2FHZB 5CZFC 4PX8A 5CW7B 4MMGA 1WMIA 4LS4A 4NRNA 2DFXE 2DJHA 3BPQB 5CEGB 4FXED 4LTTA 2OTRA 2A6RA 2KC8A 5IWHA 4FXIA 3HI2B 4MCTB 2A6QE 4Q2UB 5IXLA 4MMJA 4YY3Y 3G5OB 2A8KA 4ML2A 3AO9A 3VJ7A 4FXHA 4ML0B 1Z8MA 2KHEA 3OEIC
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2KC9 A;  4LSY A;  5CZE B;  4MCX B;  3KXE A;  2A6S A;  5CZF C;  4PX8 A;  5CW7 B;  4MMG A;  1WMI A;  4LS4 A;  4NRN A;  5CEG B;  3BPQ B;  4FXE D;  4LTT A;  2OTR A;  2A6R A;  2KC8 A;  5IWH A;  4FXI A;  4MCT B;  4Q2U B;  2A6Q E;  5IXL A;  4YY3 Y;  4MMJ A;  3G5O B;  4ML2 A;  4FXH A;  4ML0 B;  1Z8M A;  2KHE A;  3OEI C; 
#chains in the Genus database with same CATH topology
 1XQB A;  2KC9 A;  4LSY A;  5CZE B;  4MCX B;  4FBD A;  3KXE A;  2A6S A;  2PD0 A;  2FHZ B;  5CZF C;  4PX8 A;  5CW7 B;  4MMG A;  1WMI A;  4LS4 A;  4NRN A;  2DFX E;  2DJH A;  3BPQ B;  5CEG B;  4FXE D;  4LTT A;  2OTR A;  2A6R A;  2KC8 A;  5IWH A;  4FXI A;  3HI2 B;  4MCT B;  2A6Q E;  4Q2U B;  5IXL A;  4MMJ A;  4YY3 Y;  3G5O B;  2A8K A;  4ML2 A;  3AO9 A;  3VJ7 A;  4FXH A;  4ML0 B;  1Z8M A;  2KHE A;  3OEI C; 
#chains in the Genus database with same CATH homology
 2KC9 A;  4LSY A;  5CZE B;  4MCX B;  3KXE A;  2A6S A;  5CZF C;  4PX8 A;  5CW7 B;  4MMG A;  1WMI A;  4LS4 A;  4NRN A;  5CEG B;  3BPQ B;  4FXE D;  4LTT A;  2OTR A;  2A6R A;  2KC8 A;  5IWH A;  4FXI A;  4MCT B;  4Q2U B;  2A6Q E;  5IXL A;  4YY3 Y;  4MMJ A;  3G5O B;  4ML2 A;  4FXH A;  4ML0 B;  1Z8M A;  2KHE A;  3OEI C;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4YY3Y

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations