The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
115
|
sequence length |
347
|
structure length |
346
|
Chain Sequence |
APITAPDITSICKDASSGIGNQEGAIRTRKCCPPSLGKKIKDFQFPNDKKVRMRWPAHKGTKKQVDDYRRAIAAMRALPDDDPRSFVSQAKIHCAYCNGGYTQVDSGFPDIDIQIHNSWLFFPFHRWYLYFYERILGSLIDEPNFALPYWKWDEPKGMPISNIFLGDASNPLYDQYRDANHIEDRIVDLDYDGKDKDIPDQQQVACNLSTVYRDLVRNGVDPTSFFGGKYVAGDSPVANGDPSVGSVEAGSTAVHRWVGDPTQPNNEDMGNFYSAGYDPVFYIHHANVDRMWKLWKELRLPGHVDITDPDWLNASYVFYDENKDLVRVYNKDCVNLDKLKYNFIEN
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Aurone synthase is a catechol oxidase with hydroxylase activity and provides insights into the mechanism of plant polyphenol oxidases.
pubmed doi rcsb |
| molecule keywords |
Aurone synthase
|
| molecule tags |
Oxidoreductase
|
| total genus |
115
|
| structure length |
346
|
| sequence length |
347
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature | |
| pdb deposition date | 2015-03-26 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00264 | Tyrosinase | Common central domain of tyrosinase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | di-copper center containing domain from catechol oxidase | Di-copper center containing domain from catechol oxidase |
#chains in the Genus database with same CATH superfamily 4Z0Z A; 4J3P A; 1WX4 A; 1BT3 A; 1WX2 A; 3W6Q A; 3NQ1 A; 4Z10 A; 3NTM A; 1BT1 A; 4J3R A; 3NM8 A; 2ZWE A; 4P6R A; 4HD6 A; 4L37 B; 3AWY A; 2Y9X A; 4YZW A; 4P6T A; 1LLA A; 3AWS A; 1BUG A; 4J6U A; 2Y9W A; 3WKY A; 1LNL A; 1JS8 A; 3W6W A; 2ZMY A; 3AWZ A; 5I3B A; 2ZMZ A; 3WJM B; 3AWX A; 1HC1 A; 3HHS B; 4OUA A; 3AWW A; 2AHL A; 2ZMX A; 1WX5 A; 4HD7 A; 1OXY A; 5CE9 A; 3NPY A; 5I38 A; 4D87 A; 4HD4 A; 3NQ0 A; 3AWV A; 1BT2 A; 2ZWD A; 2P3X A; 3GWJ A; 3AX0 A; 1LL1 A; 3NQ5 A; 1HCY A; 4J6T A; 3AWU A; 3QJO A; 2ZWF A; 4P6S A; 4J6V A; 4L37 A; 4J3Q A; 5I3A A; 2ZWG A; 2AHK A; 3AWT A; 1WXC A; 4Z0Y A; 3WJM A; 4OUA B; 1NOL A; 3HHS A; #chains in the Genus database with same CATH topology 4Z0Z A; 4J3P A; 1WX4 A; 1BT3 A; 1WX2 A; 3W6Q A; 3NQ1 A; 4Z10 A; 3NTM A; 1BT1 A; 4J3R A; 3NM8 A; 2ZWE A; 4P6R A; 4HD6 A; 4L37 B; 3AWY A; 2Y9X A; 4YZW A; 4P6T A; 1LLA A; 3AWS A; 1BUG A; 4J6U A; 2Y9W A; 3WKY A; 1LNL A; 1JS8 A; 3W6W A; 2ZMY A; 3AWZ A; 5I3B A; 2ZMZ A; 3WJM B; 3AWX A; 1HC1 A; 3HHS B; 4OUA A; 3AWW A; 2AHL A; 2ZMX A; 1WX5 A; 4HD7 A; 1OXY A; 5CE9 A; 3NPY A; 5I38 A; 4D87 A; 4HD4 A; 3NQ0 A; 3AWV A; 1BT2 A; 2ZWD A; 2P3X A; 3GWJ A; 3AX0 A; 1LL1 A; 3NQ5 A; 1HCY A; 4J6T A; 3AWU A; 3QJO A; 2ZWF A; 4P6S A; 4J6V A; 4L37 A; 4J3Q A; 5I3A A; 2ZWG A; 2AHK A; 3AWT A; 1WXC A; 4Z0Y A; 3WJM A; 4OUA B; 1NOL A; 3HHS A; #chains in the Genus database with same CATH homology 4Z0Z A; 4J3P A; 1WX4 A; 1BT3 A; 1WX2 A; 3W6Q A; 3NQ1 A; 4Z10 A; 3NTM A; 1BT1 A; 4J3R A; 3NM8 A; 2ZWE A; 4P6R A; 4HD6 A; 4L37 B; 3AWY A; 2Y9X A; 4YZW A; 4P6T A; 1LLA A; 3AWS A; 1BUG A; 4J6U A; 2Y9W A; 3WKY A; 1LNL A; 1JS8 A; 3W6W A; 2ZMY A; 3AWZ A; 5I3B A; 2ZMZ A; 3WJM B; 3AWX A; 1HC1 A; 3HHS B; 4OUA A; 3AWW A; 2AHL A; 2ZMX A; 1WX5 A; 4HD7 A; 1OXY A; 5CE9 A; 3NPY A; 5I38 A; 4D87 A; 4HD4 A; 3NQ0 A; 3AWV A; 1BT2 A; 2ZWD A; 2P3X A; 3GWJ A; 3AX0 A; 1LL1 A; 3NQ5 A; 1HCY A; 4J6T A; 3AWU A; 3QJO A; 2ZWF A; 4P6S A; 4J6V A; 4L37 A; 4J3Q A; 5I3A A; 2ZWG A; 2AHK A; 3AWT A; 1WXC A; 4Z0Y A; 3WJM A; 4OUA B; 1NOL A; 3HHS A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
