4JTM | Genus

Total Genus 19

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	19
sequence length	81
structure length	81
Chain Sequence	GAMATFTANFKDTDLKSFIETVGANLNKTIIMGPGVQGKVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 81 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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81 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein transport
source organism	Escherichia coli
publication title	A dodecameric ring-like structure of the N0 domain of the type II secretin from enterotoxigenic Escherichia coli. pubmed doi rcsb
molecule keywords	Type II secretion system protein D
total genus	19
structure length	81
sequence length	81
chains with identical sequence	B
ec nomenclature
pdb deposition date	2013-03-23

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.55.50.30	Alpha Beta	3-Layer(bab) Sandwich	Phage tail protein beta-alpha-beta fold	Phage tail protein beta-alpha-beta fold	4jtmA00

2W6TA 3GR5A 2W76A 2A02A 2W75A 4M0NA 4AR0A 3EZJA 2W6UA 2W16A 4M0HA 4G08A 2W78A 2D1UA 2M5JA 1ZZVA 4JTMA 2W77A 2IAHA 2O5PA
chains in the Genus database with same CATH superfamily

2X531 3D37A 2W6TA 2P5ZX 3CDDA 3GR5A 3OV5A 2W76A 3ADYA 1WRUA 2A02A 2L4WA 2W75A 3GS9A 4M0NA 4AR0A 2WZPR 3EZJA 2W6UA 2W16A 4M0HA 4G08A 2W78A 2D1UA 2M5JA 1ZZVA 4JTMA 2W77A 2IAHA 4MTKA 1WTHD 2Z6BD 1K28D 2O5PA 4UHVA
chains in the Genus database with same CATH topology

2X531 2W6TA 3GR5A 3OV5A 2W76A 3ADYA 2A02A 2L4WA 2W75A 3GS9A 4M0NA 4AR0A 2WZPR 3EZJA 2W6UA 2W16A 4M0HA 4G08A 2W78A 2D1UA 2M5JA 1ZZVA 4JTMA 2W77A 2IAHA 1WTHD 2Z6BD 1K28D 2O5PA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2W6T A;  3GR5 A;  2W76 A;  2A02 A;  2W75 A;  4M0N A;  4AR0 A;  3EZJ A;  2W6U A;  2W16 A;  4M0H A;  4G08 A;  2W78 A;  2D1U A;  2M5J A;  1ZZV A;  4JTM A;  2W77 A;  2IAH A;  2O5P A; 
#chains in the Genus database with same CATH topology
 2X53 1;  3D37 A;  2W6T A;  2P5Z X;  3CDD A;  3GR5 A;  3OV5 A;  2W76 A;  3ADY A;  1WRU A;  2A02 A;  2L4W A;  2W75 A;  3GS9 A;  4M0N A;  4AR0 A;  2WZP R;  3EZJ A;  2W6U A;  2W16 A;  4M0H A;  4G08 A;  2W78 A;  2D1U A;  2M5J A;  1ZZV A;  4JTM A;  2W77 A;  2IAH A;  4MTK A;  1WTH D;  2Z6B D;  1K28 D;  2O5P A;  4UHV A; 
#chains in the Genus database with same CATH homology
 2X53 1;  2W6T A;  3GR5 A;  3OV5 A;  2W76 A;  3ADY A;  2A02 A;  2L4W A;  2W75 A;  3GS9 A;  4M0N A;  4AR0 A;  2WZP R;  3EZJ A;  2W6U A;  2W16 A;  4M0H A;  4G08 A;  2W78 A;  2D1U A;  2M5J A;  1ZZV A;  4JTM A;  2W77 A;  2IAH A;  1WTH D;  2Z6B D;  1K28 D;  2O5P A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4JTMA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN