The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
15
|
sequence length |
50
|
structure length |
50
|
Chain Sequence |
DLQSLPTRAYLDQTVVPILLQGLAVLAKERPPNPIEFLASYLLKNKAQFE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural implications of Dpy30 oligomerization for MLL/SET1 COMPASS H3K4 trimethylation
pubmed doi rcsb |
| molecule tags |
Protein binding
|
| source organism |
Homo sapiens
|
| molecule keywords |
Protein dpy-30 homolog
|
| total genus |
15
|
| structure length |
50
|
| sequence length |
50
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature | |
| pdb deposition date | 2014-11-12 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF05186 | Dpy-30 | Dpy-30 motif |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | cAMP-dependent Protein Kinase, Chain A | cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain |
#chains in the Genus database with same CATH superfamily 4RIQ A; 3IM3 A; 2H9R A; 4RTA A; 2DRN A; 2IZY A; 4F9K A; 1R2A A; 2KYG A; 3G36 A; 4RT4 A; 1L6E A; 3IM4 A; 5HVZ A; 2EZW A; 4ZP3 A; #chains in the Genus database with same CATH topology 3S4D A; 4RTA A; 2CQS A; 2OUT A; 2KYG A; 4RT4 A; 3PMI A; 3S4A A; 3IM3 A; 2CBG A; 2CQT A; 1R2A A; 3ACT A; 3ACS A; 3QDE A; 3AFJ A; 2RQY A; 3RRS A; 2CB9 A; 3GWH A; 2K9Q A; 4RIQ A; 3S4B A; 2H9R A; 2DRN A; 3QFY A; 3QFZ A; 3UFE A; 3QG0 A; 3G36 A; 3RSY A; 2EZW A; 4ZP3 A; 2KNG A; 2IZY A; 2I15 A; 4F9K A; 1L6E A; 3IM4 A; 5HVZ A; 3S4C A; #chains in the Genus database with same CATH homology 4RIQ A; 3IM3 A; 2H9R A; 4RTA A; 2DRN A; 2IZY A; 4F9K A; 1R2A A; 2KYG A; 3G36 A; 4RT4 A; 1L6E A; 3IM4 A; 5HVZ A; 2EZW A; 4ZP3 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
