4RTAA

Cystal structure of the dpy30 for mll/set1 compass h3k4 trimethylation
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
58
structure length
58
Chain Sequence
KVDLQSLPTRAYLDQTVVPILLQGLAVLAKERPPNPIEFLASYLLKNKAQFEDRNLER
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural implications of Dpy30 oligomerization for MLL/SET1 COMPASS H3K4 trimethylation.
pubmed doi rcsb
molecule tags Protein binding
source organism Homo sapiens
molecule keywords Protein dpy-30 homolog
total genus 19
structure length 58
sequence length 58
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-11-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05186 Dpy-30 Dpy-30 motif
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.890.10 Mainly Alpha Up-down Bundle cAMP-dependent Protein Kinase, Chain A cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain 4rtaA00
4RIQA 4RTAA 3G36A 1R2AA 4ZP3A 4F9KA 1L6EA 3IM3A 2KYGA 2DRNA 2IZYA 2H9RA 3IM4A 4RT4A 5HVZA 2EZWA
chains in the Genus database with same CATH superfamily
4RIQA 3GWHA 3ACTA 2CBGA 3UFEA 2EZWA 2OUTA 3PMIA 3S4BA 2CB9A 4F9KA 1L6EA 3QFYA 2KYGA 3QDEA 2I15A 3QG0A 4RTAA 3S4CA 2RQYA 4ZP3A 1R2AA 3S4DA 3ACSA 3IM3A 3AFJA 2DRNA 2IZYA 2H9RA 3RRSA 5HVZA 3G36A 3S4AA 2CQSA 2K9QA 2CQTA 3QFZA 3RSYA 2KNGA 4RT4A 3IM4A
chains in the Genus database with same CATH topology
4RIQA 4RTAA 3G36A 1R2AA 4ZP3A 4F9KA 1L6EA 3IM3A 2KYGA 2DRNA 2IZYA 2H9RA 3IM4A 4RT4A 5HVZA 2EZWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4RIQ A;  4RTA A;  3G36 A;  1R2A A;  4ZP3 A;  4F9K A;  1L6E A;  3IM3 A;  2KYG A;  2DRN A;  2IZY A;  2H9R A;  3IM4 A;  4RT4 A;  5HVZ A;  2EZW A; 
#chains in the Genus database with same CATH topology
 4RIQ A;  3GWH A;  3ACT A;  2CBG A;  3UFE A;  2EZW A;  2OUT A;  3PMI A;  3S4B A;  2CB9 A;  4F9K A;  1L6E A;  3QFY A;  2KYG A;  3QDE A;  2I15 A;  3QG0 A;  4RTA A;  3S4C A;  2RQY A;  4ZP3 A;  1R2A A;  3S4D A;  3ACS A;  3IM3 A;  3AFJ A;  2DRN A;  2IZY A;  2H9R A;  3RRS A;  5HVZ A;  3G36 A;  3S4A A;  2CQS A;  2K9Q A;  2CQT A;  3QFZ A;  3RSY A;  2KNG A;  4RT4 A;  3IM4 A; 
#chains in the Genus database with same CATH homology
 4RIQ A;  4RTA A;  3G36 A;  1R2A A;  4ZP3 A;  4F9K A;  1L6E A;  3IM3 A;  2KYG A;  2DRN A;  2IZY A;  2H9R A;  3IM4 A;  4RT4 A;  5HVZ A;  2EZW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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