5B4P | Genus

Total Genus 26

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	26
sequence length	72
structure length	72
Chain Sequence	STLQKKIEEIAAKYKHSVVKKCCYDGACVNNDETCEQRAARISLGPRCIKAFTECCVVASQLRANISHKDMQ

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Signaling protein/membrane protein
source organism	Synthetic construct
publication title	Complex structure of human C5a and its binding repebody rcsb
molecule keywords	repebody
total genus	26
structure length	72
sequence length	72
chains with identical sequence	D
ec nomenclature
pdb deposition date	2016-04-12

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF01821	ANATO	Anaphylotoxin-like domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.91.20	Mainly Alpha	Up-down Bundle	Influenza Virus Matrix Protein; Chain A, domain 1	Anaphylotoxins (complement system)	5b4pB00

4HWJA 3KLSA 4HW5A 4P3AA 1KJSA 1C5AA 2A73B 4UU9C 4WB3A 3HQAA 1CFAA 3HQBA 4WB2A 3CU7A 2B39A 4P39A 4P3BA 4FXKB 5JPNB 4I6OA 5B4PB
chains in the Genus database with same CATH superfamily

5JPMB 4HWJA 3KLSA 5CQEA 1AA7A 4HW5A 4ITVA 4IQ4A 3VDXA 4P3AA 1KJSA 1C5AA 2A73B 4UU9C 4FXGB 4WB3A 1EA3A 4D9JA 3HQAA 1CFAA 3HQBA 2Z16A 4WB2A 3CU7A 2B39A 3MD2A 4P3BA 4P39A 4FXKB 4PUSA 5JPNB 4I6OA 5B4PB
chains in the Genus database with same CATH topology

4HWJA 3KLSA 4HW5A 4P3AA 1KJSA 1C5AA 2A73B 4UU9C 4WB3A 3HQAA 1CFAA 3HQBA 4WB2A 3CU7A 2B39A 4P39A 4P3BA 4FXKB 5JPNB 4I6OA 5B4PB
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4HWJ A;  3KLS A;  4HW5 A;  4P3A A;  1KJS A;  1C5A A;  2A73 B;  4UU9 C;  4WB3 A;  3HQA A;  1CFA A;  3HQB A;  4WB2 A;  3CU7 A;  2B39 A;  4P39 A;  4P3B A;  4FXK B;  5JPN B;  4I6O A;  5B4P B; 
#chains in the Genus database with same CATH topology
 5JPM B;  4HWJ A;  3KLS A;  5CQE A;  1AA7 A;  4HW5 A;  4ITV A;  4IQ4 A;  3VDX A;  4P3A A;  1KJS A;  1C5A A;  2A73 B;  4UU9 C;  4FXG B;  4WB3 A;  1EA3 A;  4D9J A;  3HQA A;  1CFA A;  3HQB A;  2Z16 A;  4WB2 A;  3CU7 A;  2B39 A;  3MD2 A;  4P3B A;  4P39 A;  4FXK B;  4PUS A;  5JPN B;  4I6O A;  5B4P B; 
#chains in the Genus database with same CATH homology
 4HWJ A;  3KLS A;  4HW5 A;  4P3A A;  1KJS A;  1C5A A;  2A73 B;  4UU9 C;  4WB3 A;  3HQA A;  1CFA A;  3HQB A;  4WB2 A;  3CU7 A;  2B39 A;  4P39 A;  4P3B A;  4FXK B;  5JPN B;  4I6O A;  5B4P B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5B4PB

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations