5CSC | Genus

Total Genus 125

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	125
sequence length	433
structure length	429
Chain Sequence	ASSTNLKDVLAALIPKEQARIKTFRQQHGGTALGQITVDMSYGGMRGMKGLVYETSVLDPDEGIRFRGFSIPECQKLLPKGGGGEPLPEGLFWLLVTGQIPTGAQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGILRTKYWEMVYESAMDLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLGWLAQLQKAAGADASLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPGDPMFKLVAQLYKIVPNVLLEQGAAANPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGLIAL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 429 atoms

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429 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxo-acid-lyase
source organism	Gallus gallus
publication title	Crystal structure of an open conformation of citrate synthase from chicken heart at 2.8-A resolution pubmed doi rcsb
molecule keywords	CITRATE SYNTHASE
total genus	125
structure length	429
sequence length	433
ec nomenclature	ec 2.3.3.1: Citrate (Si)-synthase.
pdb deposition date	1990-05-07

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00285	Citrate_synt	Citrate synthase, C-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.230.10	Mainly Alpha	Orthogonal Bundle	Cytochrome p450-Terp; domain 2	Cytochrome P450-Terp, domain 2	5cscA02
1.10.580.10	Mainly Alpha	Orthogonal Bundle	Citrate Synthase; domain 1	Citrate Synthase, domain 1	5cscA01

1NXGA 1NXEA 2C6XA 4JAGA 4TVMA 5CTSA 1CSHA 1CSSA 1VGMA 1IOMA 1OWCA 1O7XA 2R26A 4JAEA 6CSCA 3HWKA 3CSCA 1IXEA 4E6YA 6CTSA 3O8JA 1AMZA 2CTSA 4XGHA 1AL6A 2H12A 2IFCA 1CTSA 1AJ8A 4JAFA 5CSCA 2R9EA 2CSCA 4YBOA 1A59A 1VGPA 4CTSA 4JADA 2IBPA 3TQGA 5CSCB 3MSUA 4G6BA 2P2WA 1CSCA 4CSCA 1CSRA 1OWBA 3ENJA 1CSIA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1NXG A;  1NXE A;  2C6X A;  4JAG A;  4TVM A;  5CTS A;  1CSH A;  1CSS A;  1VGM A;  1IOM A;  1OWC A;  1O7X A;  2R26 A;  4JAE A;  6CSC A;  3HWK A;  3CSC A;  1IXE A;  4E6Y A;  6CTS A;  3O8J A;  1AMZ A;  2CTS A;  4XGH A;  1AL6 A;  2H12 A;  2IFC A;  1CTS A;  1AJ8 A;  4JAF A;  5CSC A;  2R9E A;  2CSC A;  4YBO A;  1A59 A;  1VGP A;  4CTS A;  4JAD A;  2IBP A;  3TQG A;  5CSC B;  3MSU A;  4G6B A;  2P2W A;  1CSC A;  4CSC A;  1CSR A;  1OWB A;  3ENJ A;  1CSI A; 
#chains in the Genus database with same CATH topology
 1NXG A;  1NXE A;  2C6X A;  4JAG A;  4TVM A;  5CTS A;  1CSH A;  1CSS A;  1VGM A;  1IOM A;  1OWC A;  1O7X A;  2R26 A;  4JAE A;  6CSC A;  3HWK A;  3CSC A;  1IXE A;  4E6Y A;  6CTS A;  3O8J A;  1AMZ A;  2CTS A;  4XGH A;  1AL6 A;  2H12 A;  2IFC A;  1CTS A;  1AJ8 A;  4JAF A;  5CSC A;  2R9E A;  2CSC A;  4YBO A;  1A59 A;  1VGP A;  4CTS A;  4JAD A;  2IBP A;  3TQG A;  5CSC B;  3MSU A;  4G6B A;  2P2W A;  1CSC A;  4CSC A;  1CSR A;  1OWB A;  3ENJ A;  1CSI A; 
#chains in the Genus database with same CATH homology
 1NXG A;  1NXE A;  2C6X A;  4JAG A;  4TVM A;  5CTS A;  1CSH A;  1CSS A;  1VGM A;  1IOM A;  1OWC A;  1O7X A;  2R26 A;  4JAE A;  6CSC A;  3HWK A;  3CSC A;  1IXE A;  4E6Y A;  6CTS A;  3O8J A;  1AMZ A;  2CTS A;  4XGH A;  1AL6 A;  2H12 A;  2IFC A;  1CTS A;  1AJ8 A;  4JAF A;  5CSC A;  2R9E A;  2CSC A;  4YBO A;  1A59 A;  1VGP A;  4CTS A;  4JAD A;  2IBP A;  3TQG A;  5CSC B;  3MSU A;  4G6B A;  2P2W A;  1CSC A;  4CSC A;  1CSR A;  1OWB A;  3ENJ A;  1CSI A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5CSCA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations