6CTS | Genus

Total Genus 148

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	148
sequence length	433
structure length	429
Chain Sequence	ASSTNLKDVLAALIPKEQARIKTFRQQHGGTALGQITVDMSYGGMRGMKGLVYETSVLDPDEGIRFRGFSIPECQKLLPKGGGGEPLPEGLFWLLVTGQIPTGAQVSWLSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGILRTKYWEMVYESAMDLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLGWLAQLQKAAGADASLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPGDPMFKLVAQLYKIVPNVLLEQGAAANPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALGFPLERPKSMSTDGLIAL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 429 atoms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxo-acid-lyase
source organism	Gallus gallus
publication title	Proposed mechanism for the condensation reaction of citrate synthase: 1.9-A structure of the ternary complex with oxaloacetate and carboxymethyl coenzyme A. pubmed doi rcsb
molecule keywords	CITRATE SYNTHASE
total genus	148
structure length	429
sequence length	433
ec nomenclature	ec 2.3.3.1: Citrate (Si)-synthase.
pdb deposition date	1989-11-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00285	Citrate_synt	Citrate synthase, C-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.230.10	Mainly Alpha	Orthogonal Bundle	Cytochrome p450-Terp; domain 2	Cytochrome P450-Terp, domain 2	6ctsA02
1.10.580.10	Mainly Alpha	Orthogonal Bundle	Citrate Synthase; domain 1	Citrate Synthase, domain 1	6ctsA01

1A59A 2H12A 6CTSA 1NXEA 4E6YA 4CTSA 1AJ8A 1IXEA 4JAGA 5CTSA 1VGMA 2R26A 4TVMA 1IOMA 1CSSA 4JAFA 4JAEA 6CSCA 3ENJA 3HWKA 3O8JA 1OWCA 5CSCB 1CSRA 1AMZA 4CSCA 2R9EA 1VGPA 2IBPA 1OWBA 4YBOA 3MSUA 5CSCA 2P2WA 2CTSA 1CSHA 1NXGA 1AL6A 1CSIA 1O7XA 2IFCA 1CTSA 4JADA 2C6XA 4XGHA 3TQGA 4G6BA 3CSCA 1CSCA 2CSCA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1A59 A;  2H12 A;  6CTS A;  1NXE A;  4E6Y A;  4CTS A;  1AJ8 A;  1IXE A;  4JAG A;  5CTS A;  1VGM A;  2R26 A;  4TVM A;  1IOM A;  1CSS A;  4JAF A;  4JAE A;  6CSC A;  3ENJ A;  3HWK A;  3O8J A;  1OWC A;  5CSC B;  1CSR A;  1AMZ A;  4CSC A;  2R9E A;  1VGP A;  2IBP A;  1OWB A;  4YBO A;  3MSU A;  5CSC A;  2P2W A;  2CTS A;  1CSH A;  1NXG A;  1AL6 A;  1CSI A;  1O7X A;  2IFC A;  1CTS A;  4JAD A;  2C6X A;  4XGH A;  3TQG A;  4G6B A;  3CSC A;  1CSC A;  2CSC A; 
#chains in the Genus database with same CATH topology
 1A59 A;  2H12 A;  6CTS A;  1NXE A;  4E6Y A;  4CTS A;  1AJ8 A;  1IXE A;  4JAG A;  5CTS A;  1VGM A;  2R26 A;  4TVM A;  1IOM A;  1CSS A;  4JAF A;  4JAE A;  6CSC A;  3ENJ A;  3HWK A;  3O8J A;  1OWC A;  5CSC B;  1CSR A;  1AMZ A;  4CSC A;  2R9E A;  1VGP A;  2IBP A;  1OWB A;  4YBO A;  3MSU A;  5CSC A;  2P2W A;  2CTS A;  1CSH A;  1NXG A;  1AL6 A;  1CSI A;  1O7X A;  2IFC A;  1CTS A;  4JAD A;  2C6X A;  4XGH A;  3TQG A;  4G6B A;  3CSC A;  1CSC A;  2CSC A; 
#chains in the Genus database with same CATH homology
 1A59 A;  2H12 A;  6CTS A;  1NXE A;  4E6Y A;  4CTS A;  1AJ8 A;  1IXE A;  4JAG A;  5CTS A;  1VGM A;  2R26 A;  4TVM A;  1IOM A;  1CSS A;  4JAF A;  4JAE A;  6CSC A;  3ENJ A;  3HWK A;  3O8J A;  1OWC A;  5CSC B;  1CSR A;  1AMZ A;  4CSC A;  2R9E A;  1VGP A;  2IBP A;  1OWB A;  4YBO A;  3MSU A;  5CSC A;  2P2W A;  2CTS A;  1CSH A;  1NXG A;  1AL6 A;  1CSI A;  1O7X A;  2IFC A;  1CTS A;  4JAD A;  2C6X A;  4XGH A;  3TQG A;  4G6B A;  3CSC A;  1CSC A;  2CSC A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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6CTSA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations