The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
57
|
sequence length |
169
|
structure length |
169
|
Chain Sequence |
CPTIKLKRQWGGKPSLGLHYQVRPIRYVVIHHTVTGECSGLLKCAEILQNMQAYHQNELDFNDISYNFLIGNDGIVYEGTGWGLRGAHTYGYNAIGTGIAFIGNFVDKLPSDAALQAAKDLLACGVQQGELSEDYALIAGSQVISTQSPGLTLYNEIQEWPHWLSNPHH
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
A Drosophila pattern recognition receptor contains a peptidoglycan docking groove and unusual l,d-carboxypeptidase activity.
pubmed doi rcsb |
| molecule keywords |
Peptidoglycan recognition protein SA CG11709-PA
|
| molecule tags |
Hydrolase
|
| source organism |
Drosophila melanogaster
|
| total genus |
57
|
| structure length |
169
|
| sequence length |
169
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
3.4.17.13: Muramoyltetrapeptide carboxypeptidase. |
| pdb deposition date | 2004-01-08 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01510 | Amidase_2 | N-acetylmuramoyl-L-alanine amidase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Lysozyme-like | Peptidoglycan recognition protein-like |
#chains in the Genus database with same CATH superfamily 3LAT A; 2F2L A; 3D2Z A; 3QJ1 A; 2Y2E A; 3EP1 A; 3RDR A; 1YCK A; 2Y2D A; 3QS0 A; 3RT4 A; 5E0A A; 4Q8S A; 4OPP A; 2Y2B A; 4FNN A; 2EAX A; 3USX A; 4ZXM A; 3TRU A; 4Z8I A; 2XZ8 A; 1SK3 A; 4ORV A; 2WKX A; 3C2X A; 3T39 A; 2Z9N A; 3HMB A; 2APH A; 3COR A; 3NG4 A; 4Q9E A; 1OHT A; 2R90 A; 2AR3 A; 2Y2C A; 3CXA A; 4BJ4 A; 1SXR A; 4BXE A; 4BPA A; 3T2V A; 3UMQ A; 2F2L X; 1Z6I A; 3D2Y A; 3OGX A; 4OLS A; 1SK4 A; 3UML A; 4KNK A; 4OUG A; 1YB0 A; 4GF9 A; 1ARO L; 4KNL A; 1LBA A; 4BXJ A; 1J3G A; 4BOL A; 2EAV A; 3O4K A; 3NNO A; 5CTV A; 4X36 A; 2XZ4 A; 4IVV A; 2CB3 A; 5E0B A; 3NW3 A; 4BXD A; 2R2K A; 2Y28 A; 5DWF A; 1S2J A; 2RKQ A; 3CG9 A; 3UIL A; 2L47 A; 2BH7 A; 3QV4 A; 1TWQ A; #chains in the Genus database with same CATH topology 3LAT A; 2F2L A; 3D2Z A; 3QJ1 A; 2Y2E A; 3EP1 A; 3RDR A; 1YCK A; 2Y2D A; 3QS0 A; 3RT4 A; 5E0A A; 4Q8S A; 4OPP A; 2Y2B A; 4FNN A; 2EAX A; 3USX A; 4ZXM A; 3TRU A; 4Z8I A; 2XZ8 A; 1SK3 A; 4ORV A; 2WKX A; 3C2X A; 3T39 A; 2Z9N A; 3HMB A; 2APH A; 3COR A; 3NG4 A; 4Q9E A; 1OHT A; 2R90 A; 2AR3 A; 2Y2C A; 3CXA A; 4BJ4 A; 1SXR A; 4BXE A; 4BPA A; 3T2V A; 3UMQ A; 2F2L X; 1Z6I A; 3D2Y A; 3OGX A; 4OLS A; 1SK4 A; 3UML A; 4KNK A; 4OUG A; 1YB0 A; 4GF9 A; 1ARO L; 4KNL A; 1LBA A; 4BXJ A; 1J3G A; 4BOL A; 2EAV A; 3O4K A; 3NNO A; 5CTV A; 4X36 A; 2XZ4 A; 4IVV A; 2CB3 A; 5E0B A; 3NW3 A; 4BXD A; 2R2K A; 2Y28 A; 5DWF A; 1S2J A; 2RKQ A; 3CG9 A; 3UIL A; 2L47 A; 2BH7 A; 3QV4 A; 1TWQ A; #chains in the Genus database with same CATH homology 3LAT A; 2F2L A; 3D2Z A; 3QJ1 A; 2Y2E A; 3EP1 A; 3RDR A; 1YCK A; 2Y2D A; 3QS0 A; 3RT4 A; 5E0A A; 4Q8S A; 4OPP A; 2Y2B A; 4FNN A; 2EAX A; 3USX A; 4ZXM A; 3TRU A; 4Z8I A; 2XZ8 A; 1SK3 A; 4ORV A; 2WKX A; 3C2X A; 3T39 A; 2Z9N A; 3HMB A; 2APH A; 3COR A; 3NG4 A; 4Q9E A; 1OHT A; 2R90 A; 2AR3 A; 2Y2C A; 3CXA A; 4BJ4 A; 1SXR A; 4BXE A; 4BPA A; 3T2V A; 3UMQ A; 2F2L X; 1Z6I A; 3D2Y A; 3OGX A; 4OLS A; 1SK4 A; 3UML A; 4KNK A; 4OUG A; 1YB0 A; 4GF9 A; 1ARO L; 4KNL A; 1LBA A; 4BXJ A; 1J3G A; 4BOL A; 2EAV A; 3O4K A; 3NNO A; 5CTV A; 4X36 A; 2XZ4 A; 4IVV A; 2CB3 A; 5E0B A; 3NW3 A; 4BXD A; 2R2K A; 2Y28 A; 5DWF A; 1S2J A; 2RKQ A; 3CG9 A; 3UIL A; 2L47 A; 2BH7 A; 3QV4 A; 1TWQ A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
