1SK4A

Crystal structure of the c-terminal peptidoglycan-binding domain of human peptidoglycan recognition protein ialpha
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
163
structure length
162
Chain Sequence
PNIIKRSAWEARETHCPKMNLPAKYVIIIHTAGTSCTVSTDCQTVVRNIQSFHMDTRNFCDIGYHFLVGQDGGVYEGVGWHIQGSHTYGFNDIALGIAFIGYFVEKPPNAAALEAAQDLIQAVVEGYLTPNYLLMGHSDVVNILSPGQALYNIISTWPHFKH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of the C-terminal peptidoglycan-binding domain of human peptidoglycan recognition protein Ialpha
pubmed doi rcsb
molecule tags Immune system
source organism Homo sapiens
molecule keywords Peptidoglycan recognition protein I-alpha
total genus 50
structure length 162
sequence length 163
ec nomenclature
pdb deposition date 2004-03-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01510 Amidase_2 N-acetylmuramoyl-L-alanine amidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.80.10 Alpha Beta 3-Layer(aba) Sandwich Lysozyme-like Peptidoglycan recognition protein-like 1sk4A00
3T2VA 3RT4A 4BXJA 5DWFA 1YCKA 3T39A 2F2LX 3D2YA 3CORA 3CXAA 3QV4A 2R90A 4KNKA 4ZXMA 3C2XA 2R2KA 1OHTA 1S2JA 3RDRA 2WKXA 2RKQA 3UMQA 2EAXA 4Q9EA 5E0BA 4BJ4A 2BH7A 2Y2BA 4X36A 2XZ4A 4OPPA 3EP1A 4OLSA 3USXA 3NG4A 4ORVA 1YB0A 3UILA 2L47A 3NNOA 2APHA 3D2ZA 4BXEA 2F2LA 4KNLA 3QS0A 1SK4A 3TRUA 1Z6IA 2XZ8A 1AROL 4GF9A 2Y2DA 1SK3A 4BPAA 2Y28A 3NW3A 3UMLA 5E0AA 2AR3A 2CB3A 1SXRA 4BOLA 5CTVA 1J3GA 4OUGA 4Q8SA 2EAVA 3CG9A 4Z8IA 3LATA 4BXDA 3OGXA 2Y2CA 3O4KA 1TWQA 3HMBA 4IVVA 2Y2EA 1LBAA 3QJ1A 4FNNA 2Z9NA
chains in the Genus database with same CATH superfamily
3T2VA 3RT4A 4BXJA 5DWFA 1YCKA 3T39A 2F2LX 3D2YA 3CORA 3CXAA 3QV4A 2R90A 4KNKA 4ZXMA 3C2XA 2R2KA 1OHTA 1S2JA 3RDRA 2WKXA 2RKQA 3UMQA 2EAXA 4Q9EA 5E0BA 4BJ4A 2BH7A 2Y2BA 4X36A 2XZ4A 4OPPA 3EP1A 4OLSA 3USXA 3NG4A 4ORVA 1YB0A 3UILA 2L47A 3NNOA 2APHA 3D2ZA 4BXEA 2F2LA 4KNLA 3QS0A 1SK4A 3TRUA 1Z6IA 2XZ8A 1AROL 4GF9A 2Y2DA 1SK3A 4BPAA 2Y28A 3NW3A 3UMLA 5E0AA 2AR3A 2CB3A 1SXRA 4BOLA 5CTVA 1J3GA 4OUGA 4Q8SA 2EAVA 3CG9A 4Z8IA 3LATA 4BXDA 3OGXA 2Y2CA 3O4KA 1TWQA 3HMBA 4IVVA 2Y2EA 1LBAA 3QJ1A 4FNNA 2Z9NA
chains in the Genus database with same CATH topology
3T2VA 3RT4A 4BXJA 5DWFA 1YCKA 3T39A 2F2LX 3D2YA 3CORA 3CXAA 3QV4A 2R90A 4KNKA 4ZXMA 3C2XA 2R2KA 1OHTA 1S2JA 3RDRA 2WKXA 2RKQA 3UMQA 2EAXA 4Q9EA 5E0BA 4BJ4A 2BH7A 2Y2BA 4X36A 2XZ4A 4OPPA 3EP1A 4OLSA 3USXA 3NG4A 4ORVA 1YB0A 3UILA 2L47A 3NNOA 2APHA 3D2ZA 4BXEA 2F2LA 4KNLA 3QS0A 1SK4A 3TRUA 1Z6IA 2XZ8A 1AROL 4GF9A 2Y2DA 1SK3A 4BPAA 2Y28A 3NW3A 3UMLA 5E0AA 2AR3A 2CB3A 1SXRA 4BOLA 5CTVA 1J3GA 4OUGA 4Q8SA 2EAVA 3CG9A 4Z8IA 3LATA 4BXDA 3OGXA 2Y2CA 3O4KA 1TWQA 3HMBA 4IVVA 2Y2EA 1LBAA 3QJ1A 4FNNA 2Z9NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3T2V A;  3RT4 A;  4BXJ A;  5DWF A;  1YCK A;  3T39 A;  2F2L X;  3D2Y A;  3COR A;  3CXA A;  3QV4 A;  2R90 A;  4KNK A;  4ZXM A;  3C2X A;  2R2K A;  1OHT A;  1S2J A;  3RDR A;  2WKX A;  2RKQ A;  3UMQ A;  2EAX A;  4Q9E A;  5E0B A;  4BJ4 A;  2BH7 A;  2Y2B A;  4X36 A;  2XZ4 A;  4OPP A;  3EP1 A;  4OLS A;  3USX A;  3NG4 A;  4ORV A;  1YB0 A;  3UIL A;  2L47 A;  3NNO A;  2APH A;  3D2Z A;  4BXE A;  2F2L A;  4KNL A;  3QS0 A;  1SK4 A;  3TRU A;  1Z6I A;  2XZ8 A;  1ARO L;  4GF9 A;  2Y2D A;  1SK3 A;  4BPA A;  2Y28 A;  3NW3 A;  3UML A;  5E0A A;  2AR3 A;  2CB3 A;  1SXR A;  4BOL A;  5CTV A;  1J3G A;  4OUG A;  4Q8S A;  2EAV A;  3CG9 A;  4Z8I A;  3LAT A;  4BXD A;  3OGX A;  2Y2C A;  3O4K A;  1TWQ A;  3HMB A;  4IVV A;  2Y2E A;  1LBA A;  3QJ1 A;  4FNN A;  2Z9N A; 
#chains in the Genus database with same CATH topology
 3T2V A;  3RT4 A;  4BXJ A;  5DWF A;  1YCK A;  3T39 A;  2F2L X;  3D2Y A;  3COR A;  3CXA A;  3QV4 A;  2R90 A;  4KNK A;  4ZXM A;  3C2X A;  2R2K A;  1OHT A;  1S2J A;  3RDR A;  2WKX A;  2RKQ A;  3UMQ A;  2EAX A;  4Q9E A;  5E0B A;  4BJ4 A;  2BH7 A;  2Y2B A;  4X36 A;  2XZ4 A;  4OPP A;  3EP1 A;  4OLS A;  3USX A;  3NG4 A;  4ORV A;  1YB0 A;  3UIL A;  2L47 A;  3NNO A;  2APH A;  3D2Z A;  4BXE A;  2F2L A;  4KNL A;  3QS0 A;  1SK4 A;  3TRU A;  1Z6I A;  2XZ8 A;  1ARO L;  4GF9 A;  2Y2D A;  1SK3 A;  4BPA A;  2Y28 A;  3NW3 A;  3UML A;  5E0A A;  2AR3 A;  2CB3 A;  1SXR A;  4BOL A;  5CTV A;  1J3G A;  4OUG A;  4Q8S A;  2EAV A;  3CG9 A;  4Z8I A;  3LAT A;  4BXD A;  3OGX A;  2Y2C A;  3O4K A;  1TWQ A;  3HMB A;  4IVV A;  2Y2E A;  1LBA A;  3QJ1 A;  4FNN A;  2Z9N A; 
#chains in the Genus database with same CATH homology
 3T2V A;  3RT4 A;  4BXJ A;  5DWF A;  1YCK A;  3T39 A;  2F2L X;  3D2Y A;  3COR A;  3CXA A;  3QV4 A;  2R90 A;  4KNK A;  4ZXM A;  3C2X A;  2R2K A;  1OHT A;  1S2J A;  3RDR A;  2WKX A;  2RKQ A;  3UMQ A;  2EAX A;  4Q9E A;  5E0B A;  4BJ4 A;  2BH7 A;  2Y2B A;  4X36 A;  2XZ4 A;  4OPP A;  3EP1 A;  4OLS A;  3USX A;  3NG4 A;  4ORV A;  1YB0 A;  3UIL A;  2L47 A;  3NNO A;  2APH A;  3D2Z A;  4BXE A;  2F2L A;  4KNL A;  3QS0 A;  1SK4 A;  3TRU A;  1Z6I A;  2XZ8 A;  1ARO L;  4GF9 A;  2Y2D A;  1SK3 A;  4BPA A;  2Y28 A;  3NW3 A;  3UML A;  5E0A A;  2AR3 A;  2CB3 A;  1SXR A;  4BOL A;  5CTV A;  1J3G A;  4OUG A;  4Q8S A;  2EAV A;  3CG9 A;  4Z8I A;  3LAT A;  4BXD A;  3OGX A;  2Y2C A;  3O4K A;  1TWQ A;  3HMB A;  4IVV A;  2Y2E A;  1LBA A;  3QJ1 A;  4FNN A;  2Z9N A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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