1ZHVA

X-ray crystal structure protein atu0741 from agobacterium tumefaciens. northeast structural genomics consortium target atr8.
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
134
structure length
134
Chain Sequence
APRIKLKILNGSYGIARLSASEAIPAWADGGGFVSITRTDDELSIVCLIDRIPQDVRVDPGWSCFKFQGPFAFDETGIVLSVISPLSTNGIGIFVVSTFDGDHLLVRSNDLEKTADLLANAGHSLLLEHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords hypothetical protein Atu0741
publication title Crystal structure of hypothetical protein Atu071 from Agobacterium tumefaciens. Northeast Structural Genomics Consortium Target AtR8.
rcsb
source organism Agrobacterium tumefaciens str. c58
total genus 28
structure length 134
sequence length 134
ec nomenclature
pdb deposition date 2005-04-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13840 ACT_7 ACT domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2130.10 Alpha Beta 2-Layer Sandwich VC0802-like VC0802-like 1zhvA00
1ZVPA 3AB4A 3C20A 3C1NA 3AAWA 3TVIA 2F06A 3AB2A 1ZHVA 2HMFA 3C1MA
chains in the Genus database with same CATH superfamily
3TLJA 1ZVPA 3TM5A 3V8VA 3C1NA 3C20A 3V97A 3K0BA 3AAWA 3TVIA 4KR9A 2C5SA 3TMAA 3C1MA 3LDUA 2F06A 3LDGA 2HMFA 4KR6A 4KR7A 3AB4A 3AB2A 1ZHVA 3TM4A
chains in the Genus database with same CATH topology
3TLJA 1ZVPA 3TM5A 3V8VA 3C1NA 3C20A 3V97A 3K0BA 3AAWA 3TVIA 4KR9A 2C5SA 3TMAA 3C1MA 3LDUA 2F06A 3LDGA 2HMFA 4KR6A 4KR7A 3AB4A 3AB2A 1ZHVA 3TM4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZVP A;  3AB4 A;  3C20 A;  3C1N A;  3AAW A;  3TVI A;  2F06 A;  3AB2 A;  1ZHV A;  2HMF A;  3C1M A; 
#chains in the Genus database with same CATH topology
 3TLJ A;  1ZVP A;  3TM5 A;  3V8V A;  3C1N A;  3C20 A;  3V97 A;  3K0B A;  3AAW A;  3TVI A;  4KR9 A;  2C5S A;  3TMA A;  3C1M A;  3LDU A;  2F06 A;  3LDG A;  2HMF A;  4KR6 A;  4KR7 A;  3AB4 A;  3AB2 A;  1ZHV A;  3TM4 A; 
#chains in the Genus database with same CATH homology
 3TLJ A;  1ZVP A;  3TM5 A;  3V8V A;  3C1N A;  3C20 A;  3V97 A;  3K0B A;  3AAW A;  3TVI A;  4KR9 A;  2C5S A;  3TMA A;  3C1M A;  3LDU A;  2F06 A;  3LDG A;  2HMF A;  4KR6 A;  4KR7 A;  3AB4 A;  3AB2 A;  1ZHV A;  3TM4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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