2F06A

Crystal structure of protein bt0572 from bacteroides thetaiotaomicron
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
144
structure length
144
Chain Sequence
SNAMVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSDPDKAYKALKDNHFAVNITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIEVLKEKKVDLLAASDLYKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of protein BT0572 from Bacteroides thetaiotaomicron
rcsb
source organism Bacteroides thetaiotaomicron
molecule tags Structural genomics, unknown function
molecule keywords conserved hypothetical protein
total genus 37
structure length 144
sequence length 144
chains with identical sequence B
ec nomenclature
pdb deposition date 2005-11-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2130.10 Alpha Beta 2-Layer Sandwich VC0802-like VC0802-like 2f06A00
3AB4A 2F06A 1ZHVA 1ZVPA 3AAWA 3C1MA 3C1NA 3TVIA 2HMFA 3C20A 3AB2A
chains in the Genus database with same CATH superfamily
1ZHVA 2C5SA 4KR9A 3LDUA 3K0BA 3C20A 3V8VA 3V97A 4KR6A 3TM4A 3AAWA 3C1NA 3TLJA 2HMFA 3TM5A 2F06A 1ZVPA 3TMAA 4KR7A 3AB2A 3AB4A 3C1MA 3TVIA 3LDGA
chains in the Genus database with same CATH topology
1ZHVA 2C5SA 4KR9A 3LDUA 3K0BA 3C20A 3V8VA 3V97A 4KR6A 3TM4A 3AAWA 3C1NA 3TLJA 2HMFA 3TM5A 2F06A 1ZVPA 3TMAA 4KR7A 3AB2A 3AB4A 3C1MA 3TVIA 3LDGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AB4 A;  2F06 A;  1ZHV A;  1ZVP A;  3AAW A;  3C1M A;  3C1N A;  3TVI A;  2HMF A;  3C20 A;  3AB2 A; 
#chains in the Genus database with same CATH topology
 1ZHV A;  2C5S A;  4KR9 A;  3LDU A;  3K0B A;  3C20 A;  3V8V A;  3V97 A;  4KR6 A;  3TM4 A;  3AAW A;  3C1N A;  3TLJ A;  2HMF A;  3TM5 A;  2F06 A;  1ZVP A;  3TMA A;  4KR7 A;  3AB2 A;  3AB4 A;  3C1M A;  3TVI A;  3LDG A; 
#chains in the Genus database with same CATH homology
 1ZHV A;  2C5S A;  4KR9 A;  3LDU A;  3K0B A;  3C20 A;  3V8V A;  3V97 A;  4KR6 A;  3TM4 A;  3AAW A;  3C1N A;  3TLJ A;  2HMF A;  3TM5 A;  2F06 A;  1ZVP A;  3TMA A;  4KR7 A;  3AB2 A;  3AB4 A;  3C1M A;  3TVI A;  3LDG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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