3C1MA

Cyrstal structure of threonine-sensitive aspartokinase from methanococcus jannaschii with mgamp-pnp and l-aspartate
Total Genus 160
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
469
structure length
465
Chain Sequence
TTVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALDVRDIAKVGDFIKFIREKHYKAIEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEVKERLLPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESEGTLITNDMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNISLVVSEEDVDKALKALKREFGDSFLNNNLIRDVSVDKDVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHEKFIEK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
source organism Methanocaldococcus jannaschii
publication title The Structural Basis for Allosteric Inhibition of a Threonine-sensitive Aspartokinase.
pubmed doi rcsb
molecule keywords Probable aspartokinase
total genus 160
structure length 465
sequence length 469
chains with identical sequence B, C, D
ec nomenclature ec 2.7.2.4: Aspartate kinase.
pdb deposition date 2008-01-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00696 AA_kinase Amino acid kinase family
A PF01842 ACT ACT domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2130.10 Alpha Beta 2-Layer Sandwich VC0802-like VC0802-like 3c1mA02
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 3c1mA01
3L76A 3AB2A 4NDQB 3D41A 3QUNA 4JZ8A 3EK6A 2BNFA 2JJ4A 2HMFA 4NDPB 2J4JA 2BTYA 2WXBA 3LL5A 3QURA 4I49A 2E9YA 2J0WA 1GS5A 3C20A 3C1MA 2CDQA 1GSJA 2BRXA 2VA1A 2BMUA 4Q1TA 2J4LA 1B7BA 2BUFA 2AP9A 3D40A 1ZVPA 3WWNA 3S6HA 4JZ9A 4NDRB 1ZHVA 1OHBA 3WWMA 4USJA 3ZZFA 4AXSA 2BRIA 3L86A 2X2WA 2WE5A 2BNDA 2BNEA 3S6GA 3B8GA 3K4OA 3LL9A 2OGXA 3S6KA 3K4YA 2A1FA 2IJ9A 3QVHA 4KZTA 4F6TA 3ZZHA 3C1NA 2JI5A 2F06A 3LKKA 4AB7A 2OGXB 1E19A 1OH9A 2J0XA 4A7XA 2J5VA 3D2MA 3ZZGA 4A7WA 4F6TB 3NWYA 3AB4A 3AAWA 2RD5A 1Z9DA 3D2PA 3EK5A 4NDOA 3T7BA 2R8VA 3QUOA 3U6UA 1OHAA 2V4YA 2J4KA 4OLCA 3QVFA 3K52A 3TVIA 2J5TA 3ZZIA 2V5HA 2W21A 2WE4A 3K56A 4NDOB 4NDQA 4NDRA 3KZFA 4JZ7A 2JJXA 4NDPA 1YBDA 2AKOA 2R98A
chains in the Genus database with same CATH superfamily
3L76A 3AB2A 4NDQB 3K0BA 3D41A 3QUNA 4JZ8A 3EK6A 2BNFA 2JJ4A 2HMFA 4NDPB 2J4JA 2BTYA 2WXBA 3LL5A 3QURA 4I49A 2E9YA 2J0WA 1GS5A 3C20A 3C1MA 2CDQA 1GSJA 2BRXA 2VA1A 2BMUA 4Q1TA 2J4LA 1B7BA 4KR6A 2BUFA 2AP9A 3LDGA 3D40A 1ZVPA 3WWNA 3S6HA 4JZ9A 4NDRB 1ZHVA 1OHBA 3WWMA 4USJA 3ZZFA 4AXSA 2BRIA 3L86A 2X2WA 2WE5A 2BNDA 2BNEA 3S6GA 3B8GA 3K4OA 3LDUA 3LL9A 3TMAA 2OGXA 3S6KA 3K4YA 2A1FA 2IJ9A 3QVHA 4KZTA 3TLJA 4F6TA 3ZZHA 3C1NA 4KR9A 2JI5A 2C5SA 2F06A 3LKKA 4AB7A 2OGXB 4KR7A 1E19A 1OH9A 2J0XA 4A7XA 2J5VA 3D2MA 3ZZGA 3TM5A 4A7WA 3NWYA 4F6TB 3AB4A 3AAWA 2RD5A 1Z9DA 3D2PA 3EK5A 4NDOA 3T7BA 2R8VA 3QUOA 3U6UA 1OHAA 2V4YA 2J4KA 4OLCA 3TM4A 3QVFA 3K52A 3TVIA 2J5TA 3ZZIA 2V5HA 2W21A 2WE4A 3K56A 4NDOB 4NDQA 4NDRA 3KZFA 4JZ7A 3V8VA 2JJXA 4NDPA 1YBDA 2AKOA 3V97A 2R98A
chains in the Genus database with same CATH topology
3L76A 3AB2A 4NDQB 3K0BA 3D41A 3QUNA 4JZ8A 3EK6A 2BNFA 2JJ4A 2HMFA 4NDPB 2J4JA 2BTYA 2WXBA 3LL5A 3QURA 4I49A 2E9YA 2J0WA 1GS5A 3C20A 3C1MA 2CDQA 1GSJA 2BRXA 2VA1A 2BMUA 4Q1TA 2J4LA 1B7BA 4KR6A 2BUFA 2AP9A 3LDGA 3D40A 1ZVPA 3WWNA 3S6HA 4JZ9A 4NDRB 1ZHVA 1OHBA 3WWMA 4USJA 3ZZFA 4AXSA 2BRIA 3L86A 2X2WA 2WE5A 2BNDA 2BNEA 3S6GA 3B8GA 3K4OA 3LDUA 3LL9A 3TMAA 2OGXA 3S6KA 3K4YA 2A1FA 2IJ9A 3QVHA 4KZTA 3TLJA 4F6TA 3ZZHA 3C1NA 4KR9A 2JI5A 2C5SA 2F06A 3LKKA 4AB7A 2OGXB 4KR7A 1E19A 1OH9A 2J0XA 4A7XA 2J5VA 3D2MA 3ZZGA 3TM5A 4A7WA 3NWYA 4F6TB 3AB4A 3AAWA 2RD5A 1Z9DA 3D2PA 3EK5A 4NDOA 3T7BA 2R8VA 3QUOA 3U6UA 1OHAA 2V4YA 2J4KA 4OLCA 3TM4A 3QVFA 3K52A 3TVIA 2J5TA 3ZZIA 2V5HA 2W21A 2WE4A 3K56A 4NDOB 4NDQA 4NDRA 3KZFA 4JZ7A 3V8VA 2JJXA 4NDPA 1YBDA 2AKOA 3V97A 2R98A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3L76 A;  3AB2 A;  4NDQ B;  3D41 A;  3QUN A;  4JZ8 A;  3EK6 A;  2BNF A;  2JJ4 A;  2HMF A;  4NDP B;  2J4J A;  2BTY A;  2WXB A;  3LL5 A;  3QUR A;  4I49 A;  2E9Y A;  2J0W A;  1GS5 A;  3C20 A;  3C1M A;  2CDQ A;  1GSJ A;  2BRX A;  2VA1 A;  2BMU A;  4Q1T A;  2J4L A;  1B7B A;  2BUF A;  2AP9 A;  3D40 A;  1ZVP A;  3WWN A;  3S6H A;  4JZ9 A;  4NDR B;  1ZHV A;  1OHB A;  3WWM A;  4USJ A;  3ZZF A;  4AXS A;  2BRI A;  3L86 A;  2X2W A;  2WE5 A;  2BND A;  2BNE A;  3S6G A;  3B8G A;  3K4O A;  3LL9 A;  2OGX A;  3S6K A;  3K4Y A;  2A1F A;  2IJ9 A;  3QVH A;  4KZT A;  4F6T A;  3ZZH A;  3C1N A;  2JI5 A;  2F06 A;  3LKK A;  4AB7 A;  2OGX B;  1E19 A;  1OH9 A;  2J0X A;  4A7X A;  2J5V A;  3D2M A;  3ZZG A;  4A7W A;  4F6T B;  3NWY A;  3AB4 A;  3AAW A;  2RD5 A;  1Z9D A;  3D2P A;  3EK5 A;  4NDO A;  3T7B A;  2R8V A;  3QUO A;  3U6U A;  1OHA A;  2V4Y A;  2J4K A;  4OLC A;  3QVF A;  3K52 A;  3TVI A;  2J5T A;  3ZZI A;  2V5H A;  2W21 A;  2WE4 A;  3K56 A;  4NDO B;  4NDQ A;  4NDR A;  3KZF A;  4JZ7 A;  2JJX A;  4NDP A;  1YBD A;  2AKO A;  2R98 A; 
#chains in the Genus database with same CATH topology
 3L76 A;  3AB2 A;  4NDQ B;  3K0B A;  3D41 A;  3QUN A;  4JZ8 A;  3EK6 A;  2BNF A;  2JJ4 A;  2HMF A;  4NDP B;  2J4J A;  2BTY A;  2WXB A;  3LL5 A;  3QUR A;  4I49 A;  2E9Y A;  2J0W A;  1GS5 A;  3C20 A;  3C1M A;  2CDQ A;  1GSJ A;  2BRX A;  2VA1 A;  2BMU A;  4Q1T A;  2J4L A;  1B7B A;  4KR6 A;  2BUF A;  2AP9 A;  3LDG A;  3D40 A;  1ZVP A;  3WWN A;  3S6H A;  4JZ9 A;  4NDR B;  1ZHV A;  1OHB A;  3WWM A;  4USJ A;  3ZZF A;  4AXS A;  2BRI A;  3L86 A;  2X2W A;  2WE5 A;  2BND A;  2BNE A;  3S6G A;  3B8G A;  3K4O A;  3LDU A;  3LL9 A;  3TMA A;  2OGX A;  3S6K A;  3K4Y A;  2A1F A;  2IJ9 A;  3QVH A;  4KZT A;  3TLJ A;  4F6T A;  3ZZH A;  3C1N A;  4KR9 A;  2JI5 A;  2C5S A;  2F06 A;  3LKK A;  4AB7 A;  2OGX B;  4KR7 A;  1E19 A;  1OH9 A;  2J0X A;  4A7X A;  2J5V A;  3D2M A;  3ZZG A;  3TM5 A;  4A7W A;  3NWY A;  4F6T B;  3AB4 A;  3AAW A;  2RD5 A;  1Z9D A;  3D2P A;  3EK5 A;  4NDO A;  3T7B A;  2R8V A;  3QUO A;  3U6U A;  1OHA A;  2V4Y A;  2J4K A;  4OLC A;  3TM4 A;  3QVF A;  3K52 A;  3TVI A;  2J5T A;  3ZZI A;  2V5H A;  2W21 A;  2WE4 A;  3K56 A;  4NDO B;  4NDQ A;  4NDR A;  3KZF A;  4JZ7 A;  3V8V A;  2JJX A;  4NDP A;  1YBD A;  2AKO A;  3V97 A;  2R98 A; 
#chains in the Genus database with same CATH homology
 3L76 A;  3AB2 A;  4NDQ B;  3K0B A;  3D41 A;  3QUN A;  4JZ8 A;  3EK6 A;  2BNF A;  2JJ4 A;  2HMF A;  4NDP B;  2J4J A;  2BTY A;  2WXB A;  3LL5 A;  3QUR A;  4I49 A;  2E9Y A;  2J0W A;  1GS5 A;  3C20 A;  3C1M A;  2CDQ A;  1GSJ A;  2BRX A;  2VA1 A;  2BMU A;  4Q1T A;  2J4L A;  1B7B A;  4KR6 A;  2BUF A;  2AP9 A;  3LDG A;  3D40 A;  1ZVP A;  3WWN A;  3S6H A;  4JZ9 A;  4NDR B;  1ZHV A;  1OHB A;  3WWM A;  4USJ A;  3ZZF A;  4AXS A;  2BRI A;  3L86 A;  2X2W A;  2WE5 A;  2BND A;  2BNE A;  3S6G A;  3B8G A;  3K4O A;  3LDU A;  3LL9 A;  3TMA A;  2OGX A;  3S6K A;  3K4Y A;  2A1F A;  2IJ9 A;  3QVH A;  4KZT A;  3TLJ A;  4F6T A;  3ZZH A;  3C1N A;  4KR9 A;  2JI5 A;  2C5S A;  2F06 A;  3LKK A;  4AB7 A;  2OGX B;  4KR7 A;  1E19 A;  1OH9 A;  2J0X A;  4A7X A;  2J5V A;  3D2M A;  3ZZG A;  3TM5 A;  4A7W A;  3NWY A;  4F6T B;  3AB4 A;  3AAW A;  2RD5 A;  1Z9D A;  3D2P A;  3EK5 A;  4NDO A;  3T7B A;  2R8V A;  3QUO A;  3U6U A;  1OHA A;  2V4Y A;  2J4K A;  4OLC A;  3TM4 A;  3QVF A;  3K52 A;  3TVI A;  2J5T A;  3ZZI A;  2V5H A;  2W21 A;  2WE4 A;  3K56 A;  4NDO B;  4NDQ A;  4NDR A;  3KZF A;  4JZ7 A;  3V8V A;  2JJX A;  4NDP A;  1YBD A;  2AKO A;  3V97 A;  2R98 A; 
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