2HMFA

Structure of a threonine sensitive aspartokinase from methanococcus jannaschii complexed with mg-adp and aspartate
Total Genus 162
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
162
sequence length
469
structure length
464
Chain Sequence
b'TTVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALDVRDIAKVGDFIKFIREKHYKAIEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEVKERLLPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESEGTLITNDMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNISLVVSEEDVDKALKALKREFGDFLNNNLIRDVSVDKDVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHEKFIEK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The initial step in the archaeal aspartate biosynthetic pathway catalyzed by a monofunctional aspartokinase.
pubmed doi rcsb
molecule keywords Probable aspartokinase
source organism Methanocaldococcus jannaschii
molecule tags Transferase
total genus 162
structure length 464
sequence length 469
chains with identical sequence B, C, D
ec nomenclature ec 2.7.2.4: Aspartate kinase.
pdb deposition date 2006-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01842 ACT ACT domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2130.10 Alpha Beta 2-Layer Sandwich VC0802-like VC0802-like 2hmfA02
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2hmfA01
4NDQB 2AP9A 3ZZIA 3B8GA 1E19A 4NDRA 3ZZGA 2J4KA 3QVHA 2J4LA 4USJA 4JZ8A 1OHBA 3T7BA 1GSJA 3L86A 3WWMA 3D41A 2BNEA 4KZTA 2F06A 2WE5A 2J0WA 2V4YA 3EK6A 4NDQA 4A7XA 3QURA 3LL9A 2W21A 1ZVPA 3ZZFA 3ZZHA 4NDPB 2AKOA 3S6HA 3AB4A 2E9YA 2BMUA 4I49A 2J4JA 4A7WA 1Z9DA 2BNDA 3LKKA 2JJXA 2OGXA 3KZFA 3C1MA 3U6UA 2OGXB 2BTYA 2R98A 3QVFA 1GS5A 2A1FA 2BRXA 2J5VA 4NDPA 3AAWA 2BRIA 2VA1A 4AB7A 3WWNA 4JZ9A 1OH9A 2J0XA 1YBDA 3C1NA 2JI5A 3D2PA 3L76A 2IJ9A 2BNFA 2X2WA 3EK5A 3NWYA 2RD5A 2WE4A 2J5TA 3S6GA 2JJ4A 3AB2A 2CDQA 4AXSA 2HMFA 2WXBA 4Q1TA 4F6TA 4NDOA 1ZHVA 3LL5A 3TVIA 4F6TB 3S6KA 4JZ7A 4NDRB 3QUOA 4NDOB 3D40A 1OHAA 3QUNA 4OLCA 3K4OA 2R8VA 3K4YA 3K56A 3D2MA 1B7BA 3K52A 2V5HA 2BUFA 3C20A
chains in the Genus database with same CATH superfamily
4NDQB 2AP9A 3ZZIA 3B8GA 1E19A 4NDRA 3ZZGA 3TM4A 2J4KA 3QVHA 2J4LA 2C5SA 4USJA 3V97A 4JZ8A 1OHBA 3T7BA 3L86A 3WWMA 3D41A 2BNEA 4KZTA 2F06A 3V8VA 2WE5A 2J0WA 2V4YA 3EK6A 4NDQA 4A7XA 3QURA 1ZVPA 2W21A 3LL9A 3ZZFA 3ZZHA 4NDPB 2AKOA 4KR7A 3S6HA 3AB4A 2E9YA 2BMUA 4I49A 2J4JA 4A7WA 1Z9DA 2BNDA 3LKKA 2JJXA 2OGXA 3KZFA 3C1MA 3U6UA 2OGXB 2BTYA 2R98A 3QVFA 1GS5A 3LDUA 2A1FA 2BRXA 2J5VA 4NDPA 3AAWA 2BRIA 2VA1A 4AB7A 3WWNA 4JZ9A 1OH9A 2J0XA 3C20A 3K0BA 1YBDA 3C1NA 2JI5A 3D2PA 3L76A 2IJ9A 3LDGA 2BNFA 2X2WA 3EK5A 3NWYA 2RD5A 2WE4A 2J5TA 3S6GA 2JJ4A 3AB2A 4KR9A 3TM5A 2CDQA 4AXSA 2HMFA 2WXBA 4Q1TA 4F6TA 4KR6A 3TLJA 4NDOA 1ZHVA 3LL5A 3TVIA 4F6TB 3S6KA 4JZ7A 4NDRB 3QUOA 4NDOB 3D40A 1OHAA 3QUNA 4OLCA 3K4OA 2R8VA 3K4YA 3K56A 3D2MA 1B7BA 3K52A 2V5HA 3TMAA 2BUFA 1GSJA
chains in the Genus database with same CATH topology
4NDQB 2AP9A 3ZZIA 3B8GA 1E19A 4NDRA 3ZZGA 3TM4A 2J4KA 3QVHA 2J4LA 2C5SA 4USJA 3V97A 4JZ8A 1OHBA 3T7BA 3L86A 3WWMA 3D41A 2BNEA 4KZTA 2F06A 3V8VA 2WE5A 2J0WA 2V4YA 3EK6A 4NDQA 4A7XA 3QURA 1ZVPA 2W21A 3LL9A 3ZZFA 3ZZHA 4NDPB 2AKOA 4KR7A 3S6HA 3AB4A 2E9YA 2BMUA 4I49A 2J4JA 4A7WA 1Z9DA 2BNDA 3LKKA 2JJXA 2OGXA 3KZFA 3C1MA 3U6UA 2OGXB 2BTYA 2R98A 3QVFA 1GS5A 3LDUA 2A1FA 2BRXA 2J5VA 4NDPA 3AAWA 2BRIA 2VA1A 4AB7A 3WWNA 4JZ9A 1OH9A 2J0XA 3C20A 3K0BA 1YBDA 3C1NA 2JI5A 3D2PA 3L76A 2IJ9A 3LDGA 2BNFA 2X2WA 3EK5A 3NWYA 2RD5A 2WE4A 2J5TA 3S6GA 2JJ4A 3AB2A 4KR9A 3TM5A 2CDQA 4AXSA 2HMFA 2WXBA 4Q1TA 4F6TA 4KR6A 3TLJA 4NDOA 1ZHVA 3LL5A 3TVIA 4F6TB 3S6KA 4JZ7A 4NDRB 3QUOA 4NDOB 3D40A 1OHAA 3QUNA 4OLCA 3K4OA 2R8VA 3K4YA 3K56A 3D2MA 1B7BA 3K52A 2V5HA 3TMAA 2BUFA 1GSJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NDQ B;  2AP9 A;  3ZZI A;  3B8G A;  1E19 A;  4NDR A;  3ZZG A;  2J4K A;  3QVH A;  2J4L A;  4USJ A;  4JZ8 A;  1OHB A;  3T7B A;  1GSJ A;  3L86 A;  3WWM A;  3D41 A;  2BNE A;  4KZT A;  2F06 A;  2WE5 A;  2J0W A;  2V4Y A;  3EK6 A;  4NDQ A;  4A7X A;  3QUR A;  3LL9 A;  2W21 A;  1ZVP A;  3ZZF A;  3ZZH A;  4NDP B;  2AKO A;  3S6H A;  3AB4 A;  2E9Y A;  2BMU A;  4I49 A;  2J4J A;  4A7W A;  1Z9D A;  2BND A;  3LKK A;  2JJX A;  2OGX A;  3KZF A;  3C1M A;  3U6U A;  2OGX B;  2BTY A;  2R98 A;  3QVF A;  1GS5 A;  2A1F A;  2BRX A;  2J5V A;  4NDP A;  3AAW A;  2BRI A;  2VA1 A;  4AB7 A;  3WWN A;  4JZ9 A;  1OH9 A;  2J0X A;  1YBD A;  3C1N A;  2JI5 A;  3D2P A;  3L76 A;  2IJ9 A;  2BNF A;  2X2W A;  3EK5 A;  3NWY A;  2RD5 A;  2WE4 A;  2J5T A;  3S6G A;  2JJ4 A;  3AB2 A;  2CDQ A;  4AXS A;  2HMF A;  2WXB A;  4Q1T A;  4F6T A;  4NDO A;  1ZHV A;  3LL5 A;  3TVI A;  4F6T B;  3S6K A;  4JZ7 A;  4NDR B;  3QUO A;  4NDO B;  3D40 A;  1OHA A;  3QUN A;  4OLC A;  3K4O A;  2R8V A;  3K4Y A;  3K56 A;  3D2M A;  1B7B A;  3K52 A;  2V5H A;  2BUF A;  3C20 A; 
#chains in the Genus database with same CATH topology
 4NDQ B;  2AP9 A;  3ZZI A;  3B8G A;  1E19 A;  4NDR A;  3ZZG A;  3TM4 A;  2J4K A;  3QVH A;  2J4L A;  2C5S A;  4USJ A;  3V97 A;  4JZ8 A;  1OHB A;  3T7B A;  3L86 A;  3WWM A;  3D41 A;  2BNE A;  4KZT A;  2F06 A;  3V8V A;  2WE5 A;  2J0W A;  2V4Y A;  3EK6 A;  4NDQ A;  4A7X A;  3QUR A;  1ZVP A;  2W21 A;  3LL9 A;  3ZZF A;  3ZZH A;  4NDP B;  2AKO A;  4KR7 A;  3S6H A;  3AB4 A;  2E9Y A;  2BMU A;  4I49 A;  2J4J A;  4A7W A;  1Z9D A;  2BND A;  3LKK A;  2JJX A;  2OGX A;  3KZF A;  3C1M A;  3U6U A;  2OGX B;  2BTY A;  2R98 A;  3QVF A;  1GS5 A;  3LDU A;  2A1F A;  2BRX A;  2J5V A;  4NDP A;  3AAW A;  2BRI A;  2VA1 A;  4AB7 A;  3WWN A;  4JZ9 A;  1OH9 A;  2J0X A;  3C20 A;  3K0B A;  1YBD A;  3C1N A;  2JI5 A;  3D2P A;  3L76 A;  2IJ9 A;  3LDG A;  2BNF A;  2X2W A;  3EK5 A;  3NWY A;  2RD5 A;  2WE4 A;  2J5T A;  3S6G A;  2JJ4 A;  3AB2 A;  4KR9 A;  3TM5 A;  2CDQ A;  4AXS A;  2HMF A;  2WXB A;  4Q1T A;  4F6T A;  4KR6 A;  3TLJ A;  4NDO A;  1ZHV A;  3LL5 A;  3TVI A;  4F6T B;  3S6K A;  4JZ7 A;  4NDR B;  3QUO A;  4NDO B;  3D40 A;  1OHA A;  3QUN A;  4OLC A;  3K4O A;  2R8V A;  3K4Y A;  3K56 A;  3D2M A;  1B7B A;  3K52 A;  2V5H A;  3TMA A;  2BUF A;  1GSJ A; 
#chains in the Genus database with same CATH homology
 4NDQ B;  2AP9 A;  3ZZI A;  3B8G A;  1E19 A;  4NDR A;  3ZZG A;  3TM4 A;  2J4K A;  3QVH A;  2J4L A;  2C5S A;  4USJ A;  3V97 A;  4JZ8 A;  1OHB A;  3T7B A;  3L86 A;  3WWM A;  3D41 A;  2BNE A;  4KZT A;  2F06 A;  3V8V A;  2WE5 A;  2J0W A;  2V4Y A;  3EK6 A;  4NDQ A;  4A7X A;  3QUR A;  1ZVP A;  2W21 A;  3LL9 A;  3ZZF A;  3ZZH A;  4NDP B;  2AKO A;  4KR7 A;  3S6H A;  3AB4 A;  2E9Y A;  2BMU A;  4I49 A;  2J4J A;  4A7W A;  1Z9D A;  2BND A;  3LKK A;  2JJX A;  2OGX A;  3KZF A;  3C1M A;  3U6U A;  2OGX B;  2BTY A;  2R98 A;  3QVF A;  1GS5 A;  3LDU A;  2A1F A;  2BRX A;  2J5V A;  4NDP A;  3AAW A;  2BRI A;  2VA1 A;  4AB7 A;  3WWN A;  4JZ9 A;  1OH9 A;  2J0X A;  3C20 A;  3K0B A;  1YBD A;  3C1N A;  2JI5 A;  3D2P A;  3L76 A;  2IJ9 A;  3LDG A;  2BNF A;  2X2W A;  3EK5 A;  3NWY A;  2RD5 A;  2WE4 A;  2J5T A;  3S6G A;  2JJ4 A;  3AB2 A;  4KR9 A;  3TM5 A;  2CDQ A;  4AXS A;  2HMF A;  2WXB A;  4Q1T A;  4F6T A;  4KR6 A;  3TLJ A;  4NDO A;  1ZHV A;  3LL5 A;  3TVI A;  4F6T B;  3S6K A;  4JZ7 A;  4NDR B;  3QUO A;  4NDO B;  3D40 A;  1OHA A;  3QUN A;  4OLC A;  3K4O A;  2R8V A;  3K4Y A;  3K56 A;  3D2M A;  1B7B A;  3K52 A;  2V5H A;  3TMA A;  2BUF A;  1GSJ A; 
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