The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
162
|
sequence length |
469
|
structure length |
464
|
Chain Sequence |
TTVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALDVRDIAKVGDFIKFIREKHYKAIEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEVKERLLPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESEGTLITNDMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNISLVVSEEDVDKALKALKREFGDFLNNNLIRDVSVDKDVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHEKFIEK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The initial step in the archaeal aspartate biosynthetic pathway catalyzed by a monofunctional aspartokinase.
pubmed doi rcsb |
| molecule keywords |
Probable aspartokinase
|
| molecule tags |
Transferase
|
| source organism |
Methanocaldococcus jannaschii
|
| total genus |
162
|
| structure length |
464
|
| sequence length |
469
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature |
ec
2.7.2.4: Aspartate kinase. |
| pdb deposition date | 2006-07-11 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01842 | ACT | ACT domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | VC0802-like | VC0802-like | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Carbamate kinase | Acetylglutamate kinase-like |
#chains in the Genus database with same CATH superfamily 3EK5 A; 3NWY A; 3K56 A; 3K4O A; 2J4L A; 3WWN A; 4NDO B; 4NDR B; 4A7X A; 1GSJ A; 2V5H A; 3QVH A; 4F6T B; 3LKK A; 3QUN A; 2BUF A; 1ZVP A; 3D2P A; 2BTY A; 4USJ A; 4NDO A; 3C20 A; 2J0W A; 3C1M A; 4AB7 A; 2HMF A; 3WWM A; 1OHB A; 2IJ9 A; 3S6K A; 3B8G A; 2JI5 A; 2RD5 A; 2J0X A; 2R98 A; 2W21 A; 3QVF A; 3AAW A; 2AP9 A; 3ZZH A; 3T7B A; 2BRI A; 2J5V A; 2J4K A; 3EK6 A; 3QUR A; 3TVI A; 3U6U A; 2BRX A; 4NDR A; 4Q1T A; 3LL9 A; 3AB4 A; 3S6G A; 2BNF A; 4F6T A; 2R8V A; 2CDQ A; 1GS5 A; 4A7W A; 3LL5 A; 3D2M A; 4OLC A; 4JZ7 A; 3L86 A; 2BNE A; 3ZZG A; 3D40 A; 2VA1 A; 4NDQ B; 3QUO A; 2WE5 A; 2A1F A; 2BND A; 2J4J A; 4I49 A; 4AXS A; 3D41 A; 3KZF A; 4JZ9 A; 2OGX B; 1B7B A; 1E19 A; 2WXB A; 3ZZI A; 4NDQ A; 4NDP B; 1Z9D A; 3C1N A; 2J5T A; 1YBD A; 3K4Y A; 2BMU A; 3S6H A; 2AKO A; 1OH9 A; 2OGX A; 2E9Y A; 3ZZF A; 2JJX A; 2WE4 A; 4NDP A; 1OHA A; 2F06 A; 2JJ4 A; 3K52 A; 3AB2 A; 2V4Y A; 1ZHV A; 3L76 A; 4JZ8 A; 2X2W A; 4KZT A; #chains in the Genus database with same CATH topology 3EK5 A; 3NWY A; 3TMA A; 3K56 A; 3K4O A; 2J4L A; 3WWN A; 4NDO B; 4NDR B; 4A7X A; 1GSJ A; 2V5H A; 3QVH A; 4F6T B; 3LKK A; 3QUN A; 2BUF A; 3TLJ A; 1ZVP A; 3D2P A; 2BTY A; 4USJ A; 4NDO A; 3C20 A; 2J0W A; 3C1M A; 4AB7 A; 4KR6 A; 2HMF A; 3WWM A; 1OHB A; 2IJ9 A; 3TM5 A; 3S6K A; 3B8G A; 2JI5 A; 2RD5 A; 2J0X A; 2R98 A; 2W21 A; 3QVF A; 3AAW A; 2AP9 A; 3ZZH A; 3T7B A; 2BRI A; 2J5V A; 2J4K A; 3EK6 A; 3QUR A; 3TVI A; 3U6U A; 2BRX A; 2C5S A; 4NDR A; 3TM4 A; 4Q1T A; 3LL9 A; 3AB4 A; 3S6G A; 2BNF A; 4F6T A; 2R8V A; 2CDQ A; 1GS5 A; 4A7W A; 3V97 A; 3LL5 A; 3D2M A; 4OLC A; 4JZ7 A; 3L86 A; 2BNE A; 3K0B A; 3LDG A; 3ZZG A; 3D40 A; 2VA1 A; 4NDQ B; 3QUO A; 2WE5 A; 2A1F A; 2BND A; 2J4J A; 4KR7 A; 4I49 A; 4AXS A; 3D41 A; 3KZF A; 4JZ9 A; 2OGX B; 1B7B A; 1E19 A; 2WXB A; 3ZZI A; 4NDQ A; 4NDP B; 1Z9D A; 3C1N A; 4KR9 A; 2J5T A; 1YBD A; 3K4Y A; 2BMU A; 3S6H A; 2AKO A; 1OH9 A; 2OGX A; 2E9Y A; 3LDU A; 3ZZF A; 2JJX A; 2WE4 A; 4NDP A; 1OHA A; 2F06 A; 2JJ4 A; 3K52 A; 3V8V A; 3AB2 A; 2V4Y A; 1ZHV A; 3L76 A; 4JZ8 A; 2X2W A; 4KZT A; #chains in the Genus database with same CATH homology 3EK5 A; 3NWY A; 3TMA A; 3K56 A; 3K4O A; 2J4L A; 3WWN A; 4NDO B; 4NDR B; 4A7X A; 1GSJ A; 2V5H A; 3QVH A; 4F6T B; 3LKK A; 3QUN A; 2BUF A; 3TLJ A; 1ZVP A; 3D2P A; 2BTY A; 4USJ A; 4NDO A; 3C20 A; 2J0W A; 3C1M A; 4AB7 A; 4KR6 A; 2HMF A; 3WWM A; 1OHB A; 2IJ9 A; 3TM5 A; 3S6K A; 3B8G A; 2JI5 A; 2RD5 A; 2J0X A; 2R98 A; 2W21 A; 3QVF A; 3AAW A; 2AP9 A; 3ZZH A; 3T7B A; 2BRI A; 2J5V A; 2J4K A; 3EK6 A; 3QUR A; 3TVI A; 3U6U A; 2BRX A; 2C5S A; 4NDR A; 3TM4 A; 4Q1T A; 3LL9 A; 3AB4 A; 3S6G A; 2BNF A; 4F6T A; 2R8V A; 2CDQ A; 1GS5 A; 4A7W A; 3V97 A; 3LL5 A; 3D2M A; 4OLC A; 4JZ7 A; 3L86 A; 2BNE A; 3K0B A; 3LDG A; 3ZZG A; 3D40 A; 2VA1 A; 4NDQ B; 3QUO A; 2WE5 A; 2A1F A; 2BND A; 2J4J A; 4KR7 A; 4I49 A; 4AXS A; 3D41 A; 3KZF A; 4JZ9 A; 2OGX B; 1B7B A; 1E19 A; 2WXB A; 3ZZI A; 4NDQ A; 4NDP B; 1Z9D A; 3C1N A; 4KR9 A; 2J5T A; 1YBD A; 3K4Y A; 2BMU A; 3S6H A; 2AKO A; 1OH9 A; 2OGX A; 2E9Y A; 3LDU A; 3ZZF A; 2JJX A; 2WE4 A; 4NDP A; 1OHA A; 2F06 A; 2JJ4 A; 3K52 A; 3V8V A; 3AB2 A; 2V4Y A; 1ZHV A; 3L76 A; 4JZ8 A; 2X2W A; 4KZT A;
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