2HMFA

Structure of a threonine sensitive aspartokinase from methanococcus jannaschii complexed with mg-adp and aspartate
Total Genus 162
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
162
sequence length
469
structure length
464
Chain Sequence
TTVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALDVRDIAKVGDFIKFIREKHYKAIEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEVKERLLPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESEGTLITNDMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNISLVVSEEDVDKALKALKREFGDFLNNNLIRDVSVDKDVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHEKFIEK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
source organism Methanocaldococcus jannaschii
publication title The initial step in the archaeal aspartate biosynthetic pathway catalyzed by a monofunctional aspartokinase.
pubmed doi rcsb
molecule keywords Probable aspartokinase
total genus 162
structure length 464
sequence length 469
chains with identical sequence B, C, D
ec nomenclature ec 2.7.2.4: Aspartate kinase.
pdb deposition date 2006-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01842 ACT ACT domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2130.10 Alpha Beta 2-Layer Sandwich VC0802-like VC0802-like 2hmfA02
3.40.1160.10 Alpha Beta 3-Layer(aba) Sandwich Carbamate kinase Acetylglutamate kinase-like 2hmfA01
1ZHVA 3AAWA 3K56A 3C20A 3T7BA 3ZZFA 1OH9A 2J5VA 2W21A 3K4YA 4OLCA 3QVHA 1OHAA 2OGXA 3C1NA 4NDRB 4JZ9A 4F6TB 2VA1A 2BRXA 3B8GA 4NDQB 2BUFA 3ZZGA 1ZVPA 2A1FA 2J4LA 4KZTA 2J4JA 3QUNA 2BRIA 3NWYA 3WWMA 2BNEA 3EK6A 2R98A 3L76A 2J5TA 2BTYA 3AB4A 2JI5A 2CDQA 3AB2A 4NDOB 3KZFA 3U6UA 3QURA 2AP9A 2WE4A 4NDPB 4NDRA 4JZ7A 3QVFA 1GS5A 3K52A 4F6TA 2BMUA 4NDQA 2WXBA 2BNDA 3S6KA 2X2WA 4A7WA 2J0XA 1E19A 4JZ8A 2IJ9A 3K4OA 4AXSA 4A7XA 3D2MA 2J0WA 2J4KA 3LL5A 3ZZHA 3TVIA 1GSJA 4USJA 2F06A 4NDOA 2R8VA 1OHBA 2JJXA 4AB7A 4NDPA 3S6HA 1YBDA 2WE5A 4Q1TA 2V5HA 3S6GA 2OGXB 2RD5A 2BNFA 2V4YA 3LKKA 3EK5A 3L86A 3QUOA 3D41A 2JJ4A 2E9YA 3D40A 3ZZIA 2HMFA 3WWNA 1B7BA 3D2PA 4I49A 2AKOA 1Z9DA 3LL9A 3C1MA
chains in the Genus database with same CATH superfamily
1ZHVA 3AAWA 3K56A 3C20A 3T7BA 3ZZFA 2C5SA 1OH9A 2J5VA 2W21A 3K4YA 4OLCA 3QVHA 1OHAA 2OGXA 3C1NA 4NDRB 4JZ9A 4F6TB 2VA1A 2BRXA 3B8GA 4NDQB 2BUFA 3ZZGA 3LDGA 1ZVPA 2A1FA 2J4LA 4KZTA 2J4JA 3QUNA 2BRIA 3NWYA 4KR7A 2BNEA 3WWMA 3EK6A 2R98A 3L76A 2J5TA 2BTYA 3AB4A 2JI5A 2CDQA 3AB2A 4NDOB 3KZFA 3U6UA 3QURA 2AP9A 2WE4A 4NDPB 4NDRA 4JZ7A 3TM4A 1GS5A 3K52A 3QVFA 4F6TA 2BMUA 4NDQA 2WXBA 2BNDA 3S6KA 2X2WA 4A7WA 2J0XA 1E19A 4JZ8A 2IJ9A 3K4OA 4AXSA 4A7XA 3D2MA 2J0WA 2J4KA 3LL5A 3ZZHA 3TVIA 1GSJA 4USJA 3TM5A 3V97A 2F06A 4NDOA 2R8VA 4KR6A 1OHBA 2JJXA 4AB7A 4NDPA 3V8VA 3S6HA 1YBDA 2WE5A 4Q1TA 2V5HA 3S6GA 2OGXB 2RD5A 2BNFA 2V4YA 3LKKA 3EK5A 3K0BA 3L86A 3QUOA 3D41A 2JJ4A 2E9YA 3D40A 3ZZIA 2HMFA 3WWNA 3LDUA 1B7BA 3TMAA 3D2PA 4I49A 3TLJA 2AKOA 4KR9A 1Z9DA 3LL9A 3C1MA
chains in the Genus database with same CATH topology
1ZHVA 3AAWA 3K56A 3C20A 3T7BA 3ZZFA 2C5SA 1OH9A 2J5VA 2W21A 3K4YA 4OLCA 3QVHA 1OHAA 2OGXA 3C1NA 4NDRB 4JZ9A 4F6TB 2VA1A 2BRXA 3B8GA 4NDQB 2BUFA 3ZZGA 3LDGA 1ZVPA 2A1FA 2J4LA 4KZTA 2J4JA 3QUNA 2BRIA 3NWYA 4KR7A 2BNEA 3WWMA 3EK6A 2R98A 3L76A 2J5TA 2BTYA 3AB4A 2JI5A 2CDQA 3AB2A 4NDOB 3KZFA 3U6UA 3QURA 2AP9A 2WE4A 4NDPB 4NDRA 4JZ7A 3TM4A 1GS5A 3K52A 3QVFA 4F6TA 2BMUA 4NDQA 2WXBA 2BNDA 3S6KA 2X2WA 4A7WA 2J0XA 1E19A 4JZ8A 2IJ9A 3K4OA 4AXSA 4A7XA 3D2MA 2J0WA 2J4KA 3LL5A 3ZZHA 3TVIA 1GSJA 4USJA 3TM5A 3V97A 2F06A 4NDOA 2R8VA 4KR6A 1OHBA 2JJXA 4AB7A 4NDPA 3V8VA 3S6HA 1YBDA 2WE5A 4Q1TA 2V5HA 3S6GA 2OGXB 2RD5A 2BNFA 2V4YA 3LKKA 3EK5A 3K0BA 3L86A 3QUOA 3D41A 2JJ4A 2E9YA 3D40A 3ZZIA 2HMFA 3WWNA 3LDUA 1B7BA 3TMAA 3D2PA 4I49A 3TLJA 2AKOA 4KR9A 1Z9DA 3LL9A 3C1MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZHV A;  3AAW A;  3K56 A;  3C20 A;  3T7B A;  3ZZF A;  1OH9 A;  2J5V A;  2W21 A;  3K4Y A;  4OLC A;  3QVH A;  1OHA A;  2OGX A;  3C1N A;  4NDR B;  4JZ9 A;  4F6T B;  2VA1 A;  2BRX A;  3B8G A;  4NDQ B;  2BUF A;  3ZZG A;  1ZVP A;  2A1F A;  2J4L A;  4KZT A;  2J4J A;  3QUN A;  2BRI A;  3NWY A;  3WWM A;  2BNE A;  3EK6 A;  2R98 A;  3L76 A;  2J5T A;  2BTY A;  3AB4 A;  2JI5 A;  2CDQ A;  3AB2 A;  4NDO B;  3KZF A;  3U6U A;  3QUR A;  2AP9 A;  2WE4 A;  4NDP B;  4NDR A;  4JZ7 A;  3QVF A;  1GS5 A;  3K52 A;  4F6T A;  2BMU A;  4NDQ A;  2WXB A;  2BND A;  3S6K A;  2X2W A;  4A7W A;  2J0X A;  1E19 A;  4JZ8 A;  2IJ9 A;  3K4O A;  4AXS A;  4A7X A;  3D2M A;  2J0W A;  2J4K A;  3LL5 A;  3ZZH A;  3TVI A;  1GSJ A;  4USJ A;  2F06 A;  4NDO A;  2R8V A;  1OHB A;  2JJX A;  4AB7 A;  4NDP A;  3S6H A;  1YBD A;  2WE5 A;  4Q1T A;  2V5H A;  3S6G A;  2OGX B;  2RD5 A;  2BNF A;  2V4Y A;  3LKK A;  3EK5 A;  3L86 A;  3QUO A;  3D41 A;  2JJ4 A;  2E9Y A;  3D40 A;  3ZZI A;  2HMF A;  3WWN A;  1B7B A;  3D2P A;  4I49 A;  2AKO A;  1Z9D A;  3LL9 A;  3C1M A; 
#chains in the Genus database with same CATH topology
 1ZHV A;  3AAW A;  3K56 A;  3C20 A;  3T7B A;  3ZZF A;  2C5S A;  1OH9 A;  2J5V A;  2W21 A;  3K4Y A;  4OLC A;  3QVH A;  1OHA A;  2OGX A;  3C1N A;  4NDR B;  4JZ9 A;  4F6T B;  2VA1 A;  2BRX A;  3B8G A;  4NDQ B;  2BUF A;  3ZZG A;  3LDG A;  1ZVP A;  2A1F A;  2J4L A;  4KZT A;  2J4J A;  3QUN A;  2BRI A;  3NWY A;  4KR7 A;  2BNE A;  3WWM A;  3EK6 A;  2R98 A;  3L76 A;  2J5T A;  2BTY A;  3AB4 A;  2JI5 A;  2CDQ A;  3AB2 A;  4NDO B;  3KZF A;  3U6U A;  3QUR A;  2AP9 A;  2WE4 A;  4NDP B;  4NDR A;  4JZ7 A;  3TM4 A;  1GS5 A;  3K52 A;  3QVF A;  4F6T A;  2BMU A;  4NDQ A;  2WXB A;  2BND A;  3S6K A;  2X2W A;  4A7W A;  2J0X A;  1E19 A;  4JZ8 A;  2IJ9 A;  3K4O A;  4AXS A;  4A7X A;  3D2M A;  2J0W A;  2J4K A;  3LL5 A;  3ZZH A;  3TVI A;  1GSJ A;  4USJ A;  3TM5 A;  3V97 A;  2F06 A;  4NDO A;  2R8V A;  4KR6 A;  1OHB A;  2JJX A;  4AB7 A;  4NDP A;  3V8V A;  3S6H A;  1YBD A;  2WE5 A;  4Q1T A;  2V5H A;  3S6G A;  2OGX B;  2RD5 A;  2BNF A;  2V4Y A;  3LKK A;  3EK5 A;  3K0B A;  3L86 A;  3QUO A;  3D41 A;  2JJ4 A;  2E9Y A;  3D40 A;  3ZZI A;  2HMF A;  3WWN A;  3LDU A;  1B7B A;  3TMA A;  3D2P A;  4I49 A;  3TLJ A;  2AKO A;  4KR9 A;  1Z9D A;  3LL9 A;  3C1M A; 
#chains in the Genus database with same CATH homology
 1ZHV A;  3AAW A;  3K56 A;  3C20 A;  3T7B A;  3ZZF A;  2C5S A;  1OH9 A;  2J5V A;  2W21 A;  3K4Y A;  4OLC A;  3QVH A;  1OHA A;  2OGX A;  3C1N A;  4NDR B;  4JZ9 A;  4F6T B;  2VA1 A;  2BRX A;  3B8G A;  4NDQ B;  2BUF A;  3ZZG A;  3LDG A;  1ZVP A;  2A1F A;  2J4L A;  4KZT A;  2J4J A;  3QUN A;  2BRI A;  3NWY A;  4KR7 A;  2BNE A;  3WWM A;  3EK6 A;  2R98 A;  3L76 A;  2J5T A;  2BTY A;  3AB4 A;  2JI5 A;  2CDQ A;  3AB2 A;  4NDO B;  3KZF A;  3U6U A;  3QUR A;  2AP9 A;  2WE4 A;  4NDP B;  4NDR A;  4JZ7 A;  3TM4 A;  1GS5 A;  3K52 A;  3QVF A;  4F6T A;  2BMU A;  4NDQ A;  2WXB A;  2BND A;  3S6K A;  2X2W A;  4A7W A;  2J0X A;  1E19 A;  4JZ8 A;  2IJ9 A;  3K4O A;  4AXS A;  4A7X A;  3D2M A;  2J0W A;  2J4K A;  3LL5 A;  3ZZH A;  3TVI A;  1GSJ A;  4USJ A;  3TM5 A;  3V97 A;  2F06 A;  4NDO A;  2R8V A;  4KR6 A;  1OHB A;  2JJX A;  4AB7 A;  4NDP A;  3V8V A;  3S6H A;  1YBD A;  2WE5 A;  4Q1T A;  2V5H A;  3S6G A;  2OGX B;  2RD5 A;  2BNF A;  2V4Y A;  3LKK A;  3EK5 A;  3K0B A;  3L86 A;  3QUO A;  3D41 A;  2JJ4 A;  2E9Y A;  3D40 A;  3ZZI A;  2HMF A;  3WWN A;  3LDU A;  1B7B A;  3TMA A;  3D2P A;  4I49 A;  3TLJ A;  2AKO A;  4KR9 A;  1Z9D A;  3LL9 A;  3C1M A; 
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