The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
29
|
sequence length |
130
|
structure length |
128
|
Chain Sequence |
SGIKSLELLLQSMSPELMAGDYVFCTVNGALSDYLSLEPIATFREPEGLTLVLEAEKAQQAGLESSALFSLITLTVHSEAVGLTAAFATKLAEHGISANVIAGYYHDHIFVQKEKAQQALQALGEFAQ
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The crystal structure of a hypothetical protein VC0802 from Vibrio cholerae
rcsb |
| molecule tags |
Structural genomics, unknown function
|
| source organism |
Vibrio cholerae
|
| molecule keywords |
hypothetical protein VC0802
|
| total genus |
29
|
| structure length |
128
|
| sequence length |
130
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature | |
| pdb deposition date | 2005-06-02 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF10000 | ACT_3 | ACT domain |
| A | PF13840 | ACT_7 | ACT domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | VC0802-like | VC0802-like |
#chains in the Genus database with same CATH superfamily 3AB2 A; 2HMF A; 3AAW A; 2F06 A; 1ZVP A; 3TVI A; 3C20 A; 3C1M A; 3C1N A; 3AB4 A; 1ZHV A; #chains in the Genus database with same CATH topology 3AB2 A; 4KR9 A; 3V8V A; 3AAW A; 3TMA A; 1ZVP A; 3LDG A; 3C1N A; 3AB4 A; 2HMF A; 4KR6 A; 2F06 A; 3TVI A; 3C20 A; 1ZHV A; 3TM4 A; 4KR7 A; 3LDU A; 3C1M A; 2C5S A; 3V97 A; 3K0B A; 3TM5 A; 3TLJ A; #chains in the Genus database with same CATH homology 3AB2 A; 4KR9 A; 3V8V A; 3AAW A; 3TMA A; 1ZVP A; 3LDG A; 3C1N A; 3AB4 A; 2HMF A; 4KR6 A; 2F06 A; 3TVI A; 3C20 A; 1ZHV A; 3TM4 A; 4KR7 A; 3LDU A; 3C1M A; 2C5S A; 3V97 A; 3K0B A; 3TM5 A; 3TLJ A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
