1ECR | Genus

Total Genus 85

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	85
sequence length	305
structure length	305
Chain Sequence	DLVDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTFEHIVTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDPATLRFGWANKHIIKNLHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVWYKGDQKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQPLRLIIPRLHLYVAD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 305 atoms

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305 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Replication/dna
source organism	Escherichia coli
publication title	Structure of a replication-terminator protein complexed with DNA. pubmed doi rcsb
molecule keywords	DNA (5'-D(TPTPAPGPTPTPAPCPAPAPCPAPTPAPCPT)-3
total genus	85
structure length	305
sequence length	305
ec nomenclature
pdb deposition date	1996-09-01

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF05472	Ter	DNA replication terminus site-binding protein (Ter protein)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.54.10	Alpha Beta	2-Layer Sandwich	Replication Terminator Protein; Chain A, domain 2	Replication Terminator Protein; Chain A, domain 2	1ecrA02
3.50.14.10	Alpha Beta	3-Layer(bba) Sandwich	Replication Terminator Protein (Tus); Chain A, domain 1	Replication terminator Tus, domain 1 superfamily/Replication terminator Tus	1ecrA01

4XR0A 2I05A 4XR1A 1ECRA 2EWJA 4XR3A 4XR2A 2I06A
chains in the Genus database with same CATH superfamily

1WNUA 1TKGA 4XR1A 1WXOA 1TKEA 3RFNA 2ZTGA 1QF6A 1ECRA 2ZZEA 3RHUA 2ZZGA 4XR2A 2EWJA 2I06A 3WQZA 4XR0A 1V7OA 4XR3A 1TKYA 1V4PA 2I05A 1TJEA 2ZZFA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4XR0 A;  2I05 A;  4XR1 A;  1ECR A;  2EWJ A;  4XR3 A;  4XR2 A;  2I06 A; 
#chains in the Genus database with same CATH topology
 1WNU A;  1TKG A;  4XR1 A;  1WXO A;  1TKE A;  3RFN A;  2ZTG A;  1QF6 A;  1ECR A;  2ZZE A;  3RHU A;  2ZZG A;  4XR2 A;  2EWJ A;  2I06 A;  3WQZ A;  4XR0 A;  1V7O A;  4XR3 A;  1TKY A;  1V4P A;  2I05 A;  1TJE A;  2ZZF A; 
#chains in the Genus database with same CATH homology
 1WNU A;  1TKG A;  4XR1 A;  1WXO A;  1TKE A;  3RFN A;  2ZTG A;  1QF6 A;  1ECR A;  2ZZE A;  3RHU A;  2ZZG A;  4XR2 A;  2EWJ A;  2I06 A;  3WQZ A;  4XR0 A;  1V7O A;  4XR3 A;  1TKY A;  1V4P A;  2I05 A;  1TJE A;  2ZZF A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1ECRA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations